C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, gamma, cytoplasmic 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000089616 Actg1-009 ENSMUSG00000062825 10090 - 11:120346382-120346977 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004YF CIL_0004YF_0002 CGP 11:120232947-120348542

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005200 IDA structural constituent of cytoskeleton
GO:0015629 IDA actin cytoskeleton
GO:0030016 IDA myofibril
GO:0031941 IDA filamentous actin
GO:0043034 TAS costamere
GO:0045214 IDA sarcomere organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 294
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 294
ENSDART00000148290 actb2-002 nonsense_mediated_decay Danio_rerio 0 292
ENSDART00000134020 actb2-003 processed_transcript Danio_rerio 0 292
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 211
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 9e-19 97
ENSDART00000066430 acta2-201 protein_coding Danio_rerio 0.000000000000007 84
ENSDART00000149990 acta2-001 protein_coding Danio_rerio 0.000000000000007 84
ENST00000331789 ACTB-001 protein_coding Homo_sapiens 0 339
ENST00000331925 ACTG1-001 protein_coding Homo_sapiens 0 316
ENST00000345517 ACTG2-001 protein_coding Homo_sapiens 0 244
ENST00000356920 POTEE-001 protein_coding Homo_sapiens 9e-29 134
ENST00000357462 POTEF-201 protein_coding Homo_sapiens 4e-27 128
ENST00000366683 ACTA1-201 protein_coding Homo_sapiens 3e-19 100
ENST00000366684 ACTA1-001 protein_coding Homo_sapiens 3e-19 100
ENST00000397487 POTEKP-001 unprocessed_pseudogene Homo_sapiens 1e-26 126
ENST00000403258 ACTBP8-001 processed_pseudogene Homo_sapiens 4e-22 110
ENST00000409602 POTEJ-001 protein_coding Homo_sapiens 8e-29 134
ENST00000409624 ACTG2-002 protein_coding Homo_sapiens 0 244
ENST00000409731 ACTG2-008 protein_coding Homo_sapiens 0 244
ENST00000409914 POTEF-001 protein_coding Homo_sapiens 4e-27 128
ENST00000415776 ACTG1P2-001 processed_pseudogene Homo_sapiens 0 267
ENST00000415794 ACTG1P1-001 processed_pseudogene Homo_sapiens 0 239
ENST00000417657 LA16c-3G11.7-001 processed_pseudogene Homo_sapiens 3e-19 100
ENST00000417985 ACTBP1-001 processed_pseudogene Homo_sapiens 0 235
ENST00000418351 ACTBP7-001 processed_pseudogene Homo_sapiens 0 235
ENST00000418987 RP11-394D2.1-001 processed_pseudogene Homo_sapiens 0 222
ENST00000423183 ACTG1P12-001 processed_pseudogene Homo_sapiens 0 235
ENST00000423293 RP11-12M9.4-001 processed_pseudogene Homo_sapiens 0 272
ENST00000423391 ACTBL2-001 protein_coding Homo_sapiens 0 250
ENST00000423783 POTENP-001 processed_pseudogene Homo_sapiens 0 248
ENST00000425123 ACTG1P4-001 processed_pseudogene Homo_sapiens 0.0000000000003 81
ENST00000425411 ACTG1P11-001 processed_pseudogene Homo_sapiens 0 267
ENST00000425660 ACTB-002 nonsense_mediated_decay Homo_sapiens 0 339
ENST00000436287 ACTBP11-001 processed_pseudogene Homo_sapiens 0 220
ENST00000437653 RP11-809F4.2-001 processed_pseudogene Homo_sapiens 7e-20 102
ENST00000438902 ACTG2-005 nonsense_mediated_decay Homo_sapiens 0 244
ENST00000446382 ACTG1P14-001 processed_pseudogene Homo_sapiens 0.000000000000007 86
ENST00000451531 POTEI-001 protein_coding Homo_sapiens 2e-28 134
ENST00000462494 ACTB-003 retained_intron Homo_sapiens 0 339
ENST00000464611 ACTB-013 processed_transcript Homo_sapiens 3e-26 122
ENST00000473257 ACTB-011 processed_transcript Homo_sapiens 7e-32 141
ENST00000484841 ACTB-005 retained_intron Homo_sapiens 0 202
ENST00000491397 AMY2B-003 processed_transcript Homo_sapiens 7e-16 92
ENST00000493945 ACTB-004 retained_intron Homo_sapiens 6e-26 122
ENST00000507366 CTC-512J14.7-001 processed_pseudogene Homo_sapiens 2e-20 104
ENST00000512165 CH17-12M21.1-001 processed_pseudogene Homo_sapiens 0 215
ENST00000515712 ACTBP2-001 processed_pseudogene Homo_sapiens 0 289
ENST00000558391 RP11-752G15.9-001 transcribed_processed_pseudogene Homo_sapiens 0 196
ENST00000560958 RP11-752G15.9-002 processed_transcript Homo_sapiens 0 196
ENST00000572105 ACTG1-015 nonsense_mediated_decay Homo_sapiens 0 316
ENST00000573283 ACTG1-003 protein_coding Homo_sapiens 0 316
ENST00000574671 ACTG1-008 retained_intron Homo_sapiens 0 316
ENST00000575087 ACTG1-002 protein_coding Homo_sapiens 0 316
ENST00000575842 ACTG1-012 protein_coding Homo_sapiens 0 316
ENST00000576209 ACTG1-009 retained_intron Homo_sapiens 0 316
ENST00000576214 ACTG1-016 retained_intron Homo_sapiens 2e-25 121
ENST00000576544 ACTG1-006 nonsense_mediated_decay Homo_sapiens 0 316
ENST00000576917 ACTG1-004 retained_intron Homo_sapiens 2e-22 111
ENST00000615544 ACTG1-201 protein_coding Homo_sapiens 0 316

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