C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, gamma, cytoplasmic 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000144868 Actg1-003 ENSMUSG00000062825 10090 - 11:120347720-120348495 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004YF CIL_0004YF_0002 CGP 11:120232947-120348542

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 206
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 195
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 189
ENSDART00000109883 ACTC1 (2 of 2)-002 protein_coding Danio_rerio 1e-39 167
ENST00000290378 ACTC1-001 protein_coding Homo_sapiens 1.4013e-45 189
ENST00000331925 ACTG1-001 protein_coding Homo_sapiens 0 222
ENST00000356920 POTEE-001 protein_coding Homo_sapiens 1.00053e-42 180
ENST00000357462 POTEF-201 protein_coding Homo_sapiens 4.99997e-41 174
ENST00000366683 ACTA1-201 protein_coding Homo_sapiens 0 217
ENST00000366684 ACTA1-001 protein_coding Homo_sapiens 0 217
ENST00000397487 POTEKP-001 unprocessed_pseudogene Homo_sapiens 6e-39 167
ENST00000409602 POTEJ-001 protein_coding Homo_sapiens 1.00053e-42 180
ENST00000409914 POTEF-001 protein_coding Homo_sapiens 4.99997e-41 174
ENST00000411655 ACTBP14-001 processed_pseudogene Homo_sapiens 0 200
ENST00000415794 ACTG1P1-001 processed_pseudogene Homo_sapiens 7e-30 135
ENST00000417657 LA16c-3G11.7-001 processed_pseudogene Homo_sapiens 4.99997e-41 172
ENST00000418351 ACTBP7-001 processed_pseudogene Homo_sapiens 0 189
ENST00000420887 RP11-259P15.3-001 processed_pseudogene Homo_sapiens 5e-21 106
ENST00000423783 POTENP-001 processed_pseudogene Homo_sapiens 0.00000009 62
ENST00000428275 ACTG1P10-001 processed_pseudogene Homo_sapiens 1.00053e-42 178
ENST00000436287 ACTBP11-001 processed_pseudogene Homo_sapiens 0 211
ENST00000438944 RP11-480I12.9-001 transcribed_processed_pseudogene Homo_sapiens 1e-37 161
ENST00000441772 AC139143.2-001 processed_pseudogene Homo_sapiens 5.99994e-41 172
ENST00000446382 ACTG1P14-001 processed_pseudogene Homo_sapiens 4e-37 159
ENST00000451531 POTEI-001 protein_coding Homo_sapiens 1.99965e-42 180
ENST00000457622 ACTG1P9-001 processed_pseudogene Homo_sapiens 1.4013e-45 189
ENST00000502306 CTD-2313D3.1-001 processed_pseudogene Homo_sapiens 3e-38 163
ENST00000512165 CH17-12M21.1-001 processed_pseudogene Homo_sapiens 3.99931e-42 176
ENST00000515712 ACTBP2-001 processed_pseudogene Homo_sapiens 0 217
ENST00000520036 ACTBP6-001 processed_pseudogene Homo_sapiens 5e-31 139
ENST00000547848 POTEM-001 protein_coding Homo_sapiens 9.99995e-41 172
ENST00000564713 RP11-429P3.4-001 transcribed_processed_pseudogene Homo_sapiens 4e-37 159
ENST00000570382 ACTG1-014 protein_coding Homo_sapiens 0 222
ENST00000571691 ACTG1-017 protein_coding Homo_sapiens 8.00141e-43 178
ENST00000571721 ACTG1-013 protein_coding Homo_sapiens 0 222
ENST00000572105 ACTG1-015 nonsense_mediated_decay Homo_sapiens 0 222
ENST00000573283 ACTG1-003 protein_coding Homo_sapiens 0 222
ENST00000575087 ACTG1-002 protein_coding Homo_sapiens 0 222
ENST00000575659 ACTG1-010 protein_coding Homo_sapiens 0 222
ENST00000575842 ACTG1-012 protein_coding Homo_sapiens 0 222
ENST00000575994 ACTG1-011 protein_coding Homo_sapiens 0 222
ENST00000576209 ACTG1-009 retained_intron Homo_sapiens 0 224
ENST00000576214 ACTG1-016 retained_intron Homo_sapiens 0 222
ENST00000576544 ACTG1-006 nonsense_mediated_decay Homo_sapiens 0 222
ENST00000576917 ACTG1-004 retained_intron Homo_sapiens 0 222
ENST00000615544 ACTG1-201 protein_coding Homo_sapiens 0 222

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