C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, gamma, cytoplasmic 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000062147 Actg1-006 ENSMUSG00000062825 10090 - 11:120346033-120348475 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonLiverOvaryPlacentaTestisENSMUST00000062147
Transcript ID Adrenal Brain Colon Liver Ovary Placenta Testis
ENSMUST00000062147 187.826±33.95 100.288±0.00 235.868±22.06 29.404±2.64 170.318±4.45 904.865±509.57 36.328±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004YF CIL_0004YF_0002 CGP 11:120232947-120348542

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005200 IDA structural constituent of cytoskeleton
GO:0015629 IDA actin cytoskeleton
GO:0030016 IDA myofibril
GO:0031941 IDA filamentous actin
GO:0043034 TAS costamere
GO:0045214 IDA sarcomere organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 424
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 424
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 407
ENSDART00000062370 actc1a-001 protein_coding Danio_rerio 0 342
ENSDART00000080664 protein_coding Danio_rerio 0 339
ENSDART00000114549 hm:zewp0073-201 protein_coding Danio_rerio 0 331
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 326
ENSDART00000066430 acta2-201 protein_coding Danio_rerio 0 324
ENSDART00000149990 acta2-001 protein_coding Danio_rerio 0 324
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 303
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 303
ENSDART00000148290 actb2-002 nonsense_mediated_decay Danio_rerio 0 224
ENSDART00000134020 actb2-003 processed_transcript Danio_rerio 0 224
ENST00000224784 ACTA2-001 protein_coding Homo_sapiens 0 326
ENST00000331789 ACTB-001 protein_coding Homo_sapiens 0 466
ENST00000331925 ACTG1-001 protein_coding Homo_sapiens 0 730
ENST00000345517 ACTG2-001 protein_coding Homo_sapiens 0 353
ENST00000356920 POTEE-001 protein_coding Homo_sapiens 0 433
ENST00000357462 POTEF-201 protein_coding Homo_sapiens 0 427
ENST00000366683 ACTA1-201 protein_coding Homo_sapiens 0 287
ENST00000366684 ACTA1-001 protein_coding Homo_sapiens 0 296
ENST00000397487 POTEKP-001 unprocessed_pseudogene Homo_sapiens 0 414
ENST00000403258 ACTBP8-001 processed_pseudogene Homo_sapiens 0 370
ENST00000409602 POTEJ-001 protein_coding Homo_sapiens 0 433
ENST00000409624 ACTG2-002 protein_coding Homo_sapiens 0 353
ENST00000409731 ACTG2-008 protein_coding Homo_sapiens 0 353
ENST00000409914 POTEF-001 protein_coding Homo_sapiens 0 427
ENST00000415776 ACTG1P2-001 processed_pseudogene Homo_sapiens 0 368
ENST00000415794 ACTG1P1-001 processed_pseudogene Homo_sapiens 0 377
ENST00000417657 LA16c-3G11.7-001 processed_pseudogene Homo_sapiens 0 399
ENST00000418351 ACTBP7-001 processed_pseudogene Homo_sapiens 0 355
ENST00000420887 RP11-259P15.3-001 processed_pseudogene Homo_sapiens 0 261
ENST00000423183 ACTG1P12-001 processed_pseudogene Homo_sapiens 0 340
ENST00000423293 RP11-12M9.4-001 processed_pseudogene Homo_sapiens 0 357
ENST00000423391 ACTBL2-001 protein_coding Homo_sapiens 0 316
ENST00000423783 POTENP-001 processed_pseudogene Homo_sapiens 0 333
ENST00000425123 ACTG1P4-001 processed_pseudogene Homo_sapiens 0 327
ENST00000425411 ACTG1P11-001 processed_pseudogene Homo_sapiens 0 368
ENST00000425660 ACTB-002 nonsense_mediated_decay Homo_sapiens 0 466
ENST00000428275 ACTG1P10-001 processed_pseudogene Homo_sapiens 9.99967e-42 174
ENST00000431536 RP4-706L14.2-001 processed_pseudogene Homo_sapiens 0 311
ENST00000435871 ACTBP12-001 transcribed_processed_pseudogene Homo_sapiens 0 339
ENST00000437653 RP11-809F4.2-001 processed_pseudogene Homo_sapiens 0 307
ENST00000438902 ACTG2-005 nonsense_mediated_decay Homo_sapiens 0 353
ENST00000441772 AC139143.2-001 processed_pseudogene Homo_sapiens 0 305
ENST00000446382 ACTG1P14-001 processed_pseudogene Homo_sapiens 0 374
ENST00000451531 POTEI-001 protein_coding Homo_sapiens 0 427
ENST00000457622 ACTG1P9-001 processed_pseudogene Homo_sapiens 0 614
ENST00000458208 ACTA2-201 protein_coding Homo_sapiens 0 326
ENST00000462494 ACTB-003 retained_intron Homo_sapiens 0 466
ENST00000464611 ACTB-013 processed_transcript Homo_sapiens 0 350
ENST00000486001 RP11-4K3__A.5-001 processed_pseudogene Homo_sapiens 0 351
ENST00000491397 AMY2B-003 processed_transcript Homo_sapiens 0 538
ENST00000493945 ACTB-004 retained_intron Homo_sapiens 0 462
ENST00000502306 CTD-2313D3.1-001 processed_pseudogene Homo_sapiens 0 259
ENST00000507366 CTC-512J14.7-001 processed_pseudogene Homo_sapiens 0 377
ENST00000512165 CH17-12M21.1-001 processed_pseudogene Homo_sapiens 7e-40 169
ENST00000515712 ACTBP2-001 processed_pseudogene Homo_sapiens 0 409
ENST00000558391 RP11-752G15.9-001 transcribed_processed_pseudogene Homo_sapiens 0 268
ENST00000560958 RP11-752G15.9-002 processed_transcript Homo_sapiens 0 363
ENST00000567299 CTC-543D15.1-001 processed_pseudogene Homo_sapiens 0 272
ENST00000570019 RP11-602M11.3-001 processed_pseudogene Homo_sapiens 0 274
ENST00000570382 ACTG1-014 protein_coding Homo_sapiens 0 211
ENST00000571691 ACTG1-017 protein_coding Homo_sapiens 8.00141e-43 178
ENST00000571721 ACTG1-013 protein_coding Homo_sapiens 0 206
ENST00000572105 ACTG1-015 nonsense_mediated_decay Homo_sapiens 0 340
ENST00000573283 ACTG1-003 protein_coding Homo_sapiens 0 730
ENST00000574671 ACTG1-008 retained_intron Homo_sapiens 0 730
ENST00000575087 ACTG1-002 protein_coding Homo_sapiens 0 730
ENST00000575659 ACTG1-010 protein_coding Homo_sapiens 0 206
ENST00000575842 ACTG1-012 protein_coding Homo_sapiens 0 730
ENST00000575994 ACTG1-011 protein_coding Homo_sapiens 0 206
ENST00000576209 ACTG1-009 retained_intron Homo_sapiens 0 730
ENST00000576214 ACTG1-016 retained_intron Homo_sapiens 0 209
ENST00000576544 ACTG1-006 nonsense_mediated_decay Homo_sapiens 0 675
ENST00000576917 ACTG1-004 retained_intron Homo_sapiens 0 726
ENST00000594933 ACTBP12-002 processed_transcript Homo_sapiens 0 652
ENST00000615544 ACTG1-201 protein_coding Homo_sapiens 0 678

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