C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AT rich interactive domain 1B (SWI-like)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115799 Arid1b-001 ENSMUSG00000069729 10090 + 17:4996421-5347656 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000115799
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000115799 2.986±0.00 7.253±2.96 1.628±0.00 2.003±1.24 3.850±2.25 3.832±1.13 1.612±0.00 3.940±0.96 0.893±0.36 5.339±1.61 0.640±0.06 5.968±2.25 1.534±0.60 0.062±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00055G CIL_00055G_0002 CGP 17:3635240-5347656
CIL_00055F CIL_00055F_0002 CGP 17:4994332-5440259

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0006338 IC chromatin remodeling
GO:0071565 IDA nBAF complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000319584 ARID1B-004 protein_coding Homo_sapiens 0 1744
ENST00000324856 ARID1A-001 protein_coding Homo_sapiens 9e-27 128
ENST00000346085 ARID1B-001 protein_coding Homo_sapiens 0 6017
ENST00000350026 ARID1B-009 protein_coding Homo_sapiens 0 5605
ENST00000400790 ARID1B-006 protein_coding Homo_sapiens 0 531
ENST00000414678 ARID1B-005 protein_coding Homo_sapiens 0 7834
ENST00000452544 ARID1B-002 retained_intron Homo_sapiens 0 701
ENST00000478761 ARID1B-003 processed_transcript Homo_sapiens 0 761
ENST00000494260 ARID1B-008 processed_transcript Homo_sapiens 0 195

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