C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytotoxic granule-associated RNA binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000136387 Tia1-011 ENSMUSG00000071337 10090 + 6:86413827-86422119 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000136387
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000136387 8.103±0.00 12.753±0.00 1.309±0.41 0.780±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089T CIL_00089T_0002 VISTA 6:86179085-86780169

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000282574 TIA1-006 protein_coding Homo_sapiens 0 322
ENST00000361692 TIA1-023 protein_coding Homo_sapiens 0 429
ENST00000415783 TIA1-002 protein_coding Homo_sapiens 0 429
ENST00000416149 TIA1-004 protein_coding Homo_sapiens 0 322
ENST00000433529 TIA1-001 protein_coding Homo_sapiens 0 322
ENST00000445587 TIA1-003 protein_coding Homo_sapiens 0 429
ENST00000454815 TIA1-013 protein_coding Homo_sapiens 2e-19 100
ENST00000474809 TIA1-009 nonsense_mediated_decay Homo_sapiens 0 322
ENST00000477044 TIA1-008 nonsense_mediated_decay Homo_sapiens 0 322
ENST00000481650 TIA1-011 retained_intron Homo_sapiens 0 294
ENST00000496452 TIA1-010 retained_intron Homo_sapiens 0 322

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