C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytotoxic granule-associated RNA binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000095753 Tia1-001 ENSMUSG00000071337 10090 + 6:86404219-86433403 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000095753
Transcript ID Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000095753 3.487±1.47 19.231±4.74 2.729±1.10 1.539±0.00 1.199±0.23 3.247±1.02 2.482±0.55 1.175±0.22 5.689±0.97 2.152±1.19 1.284±0.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089T CIL_00089T_0002 VISTA 6:86179085-86780169

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006915 IEA apoptotic process
GO:0010494 IDA cytoplasmic stress granule
GO:0017091 IDA AU-rich element binding
GO:0017148 IMP negative regulation of translation
GO:0042036 IMP negative regulation of cytokine biosynthetic process
GO:0044822 IEA poly(A) RNA binding
GO:0048024 IEA regulation of mRNA splicing, via spliceosome
GO:0097165 ISO nuclear stress granule

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000282574 TIA1-006 protein_coding Homo_sapiens 0 2946
ENST00000361692 TIA1-023 protein_coding Homo_sapiens 0 353
ENST00000415783 TIA1-002 protein_coding Homo_sapiens 0 2398
ENST00000416149 TIA1-004 protein_coding Homo_sapiens 0 900
ENST00000433529 TIA1-001 protein_coding Homo_sapiens 0 3014
ENST00000445587 TIA1-003 protein_coding Homo_sapiens 0 682
ENST00000454815 TIA1-013 protein_coding Homo_sapiens 0 608
ENST00000468787 TIA1-020 processed_transcript Homo_sapiens 0 586
ENST00000470096 C2orf42-015 processed_transcript Homo_sapiens 9.99995e-41 171
ENST00000474699 TIA1-015 retained_intron Homo_sapiens 0 298
ENST00000474809 TIA1-009 nonsense_mediated_decay Homo_sapiens 0 739
ENST00000477044 TIA1-008 nonsense_mediated_decay Homo_sapiens 0 582
ENST00000477415 TIA1-017 retained_intron Homo_sapiens 0 645
ENST00000481650 TIA1-011 retained_intron Homo_sapiens 0 510
ENST00000482876 TIA1-018 processed_transcript Homo_sapiens 0 671
ENST00000484065 TIA1-022 retained_intron Homo_sapiens 0 270
ENST00000486392 TIA1-016 retained_intron Homo_sapiens 0 379
ENST00000495774 TIA1-021 retained_intron Homo_sapiens 0 486
ENST00000496096 TIA1-014 retained_intron Homo_sapiens 0 494
ENST00000496452 TIA1-010 retained_intron Homo_sapiens 0 562
ENST00000497672 TIA1-019 retained_intron Homo_sapiens 0 241

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