C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytotoxic granule-associated RNA binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113713 Tia1-007 ENSMUSG00000071337 10090 + 6:86404336-86432180 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastLiverOvaryENSMUST00000113713
Transcript ID Adrenal Breast Liver Ovary
ENSMUST00000113713 7.197±3.17 3.642±0.52 0.693±0.00 10.838±2.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089T CIL_00089T_0002 VISTA 6:86179085-86780169

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0010494 IDA cytoplasmic stress granule
GO:0017091 IDA AU-rich element binding
GO:0017148 IMP negative regulation of translation
GO:0042036 IMP negative regulation of cytokine biosynthetic process
GO:0097165 ISO nuclear stress granule

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000282574 TIA1-006 protein_coding Homo_sapiens 0 2385
ENST00000361692 TIA1-023 protein_coding Homo_sapiens 0 553
ENST00000415783 TIA1-002 protein_coding Homo_sapiens 0 2874
ENST00000416149 TIA1-004 protein_coding Homo_sapiens 0 407
ENST00000433529 TIA1-001 protein_coding Homo_sapiens 0 2398
ENST00000445587 TIA1-003 protein_coding Homo_sapiens 0 1114
ENST00000454815 TIA1-013 protein_coding Homo_sapiens 0 608
ENST00000468787 TIA1-020 processed_transcript Homo_sapiens 0 586
ENST00000470096 C2orf42-015 processed_transcript Homo_sapiens 1e-34 150
ENST00000474699 TIA1-015 retained_intron Homo_sapiens 0 298
ENST00000474809 TIA1-009 nonsense_mediated_decay Homo_sapiens 0 475
ENST00000477044 TIA1-008 nonsense_mediated_decay Homo_sapiens 0 475
ENST00000477415 TIA1-017 retained_intron Homo_sapiens 0 643
ENST00000481650 TIA1-011 retained_intron Homo_sapiens 0 514
ENST00000482876 TIA1-018 processed_transcript Homo_sapiens 0 671
ENST00000484065 TIA1-022 retained_intron Homo_sapiens 0 270
ENST00000486392 TIA1-016 retained_intron Homo_sapiens 0 379
ENST00000495774 TIA1-021 retained_intron Homo_sapiens 0 486
ENST00000496096 TIA1-014 retained_intron Homo_sapiens 0 494
ENST00000496452 TIA1-010 retained_intron Homo_sapiens 0 475
ENST00000497672 TIA1-019 retained_intron Homo_sapiens 0 241

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