C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytotoxic granule-associated RNA binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113712 Tia1-005 ENSMUSG00000071337 10090 + 6:86404325-86433227 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113712
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113712 3.603±0.70 3.284±0.07 5.424±1.67 32.228±5.96 2.836±0.48 1.680±0.13 1.440±0.23 1.456±0.34 2.267±0.76 3.005±0.59 1.459±0.28 5.484±1.18 1.906±0.41 1.016±0.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089T CIL_00089T_0002 VISTA 6:86179085-86780169

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0010494 IDA cytoplasmic stress granule
GO:0017091 IDA AU-rich element binding
GO:0017148 IMP negative regulation of translation
GO:0042036 IMP negative regulation of cytokine biosynthetic process
GO:0097165 ISO nuclear stress granule

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000282574 TIA1-006 protein_coding Homo_sapiens 0 1982
ENST00000361692 TIA1-023 protein_coding Homo_sapiens 0 353
ENST00000415783 TIA1-002 protein_coding Homo_sapiens 0 1995
ENST00000416149 TIA1-004 protein_coding Homo_sapiens 0 1070
ENST00000433529 TIA1-001 protein_coding Homo_sapiens 0 1995
ENST00000445587 TIA1-003 protein_coding Homo_sapiens 0 682
ENST00000454815 TIA1-013 protein_coding Homo_sapiens 0 1136
ENST00000468787 TIA1-020 processed_transcript Homo_sapiens 0 712
ENST00000470096 C2orf42-015 processed_transcript Homo_sapiens 1e-34 150
ENST00000474699 TIA1-015 retained_intron Homo_sapiens 0 366
ENST00000474809 TIA1-009 nonsense_mediated_decay Homo_sapiens 0 675
ENST00000477044 TIA1-008 nonsense_mediated_decay Homo_sapiens 0 564
ENST00000477415 TIA1-017 retained_intron Homo_sapiens 0 407
ENST00000481650 TIA1-011 retained_intron Homo_sapiens 0 483
ENST00000482876 TIA1-018 processed_transcript Homo_sapiens 0 422
ENST00000484065 TIA1-022 retained_intron Homo_sapiens 2.94273e-44 182
ENST00000486392 TIA1-016 retained_intron Homo_sapiens 0 379
ENST00000495774 TIA1-021 retained_intron Homo_sapiens 0 486
ENST00000496096 TIA1-014 retained_intron Homo_sapiens 0 298
ENST00000496452 TIA1-010 retained_intron Homo_sapiens 0 510
ENST00000497672 TIA1-019 retained_intron Homo_sapiens 0 346

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