C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106843 Smarcd2-002 ENSMUSG00000078619 10090 - 11:106263179-106267799 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000106843
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000106843 9.126±2.14 11.638±1.42 14.474±1.68 3.360±0.27 12.710±1.33 7.926±1.02 2.225±0.74 2.974±0.44 6.684±0.36 9.857±0.63 2.132±1.19 9.595±3.84 4.783±0.00 4.478±1.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B9 CIL_0009B9_0002 VISTA 11:105834084-106435839
CIL_0006QA CIL_0006QA_0002 CGP 11:106256154-106272972

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000225742 SMARCD2-002 protein_coding Homo_sapiens 0 2117
ENST00000323347 SMARCD2-003 protein_coding Homo_sapiens 0 2230
ENST00000448276 SMARCD2-001 protein_coding Homo_sapiens 0 2449
ENST00000450364 SMARCD2-012 protein_coding Homo_sapiens 0 684
ENST00000577686 SMARCD2-008 retained_intron Homo_sapiens 0 252
ENST00000578234 SMARCD2-009 retained_intron Homo_sapiens 0 619
ENST00000580054 SMARCD2-007 nonsense_mediated_decay Homo_sapiens 0 327
ENST00000584400 SMARCD2-006 nonsense_mediated_decay Homo_sapiens 0 1033
ENST00000584483 SMARCD2-010 retained_intron Homo_sapiens 0 619
ENST00000613943 SMARCD2-201 protein_coding Homo_sapiens 0 2449

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