C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021052 Smarcd2-001 ENSMUSG00000078619 10090 - 11:106263179-106272972 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021052
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021052 25.318±9.22 35.578±13.26 18.423±5.37 4.920±1.71 23.755±10.56 31.231±7.45 4.959±0.77 11.693±1.08 18.409±6.40 26.022±3.28 3.161±1.31 21.122±6.88 16.737±3.00 11.683±5.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B9 CIL_0009B9_0002 VISTA 11:105834084-106435839
CIL_0006QA CIL_0006QA_0002 CGP 11:106256154-106272972

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IEA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0005634 IEA nucleus
GO:0006337 IEA nucleosome disassembly
GO:0006338 IEA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016514 IEA SWI/SNF complex
GO:0031492 IEA nucleosomal DNA binding
GO:0043044 IEA ATP-dependent chromatin remodeling
GO:0043234 IEA protein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000225742 SMARCD2-002 protein_coding Homo_sapiens 0 2117
ENST00000323347 SMARCD2-003 protein_coding Homo_sapiens 0 2224
ENST00000448276 SMARCD2-001 protein_coding Homo_sapiens 0 2813
ENST00000450364 SMARCD2-012 protein_coding Homo_sapiens 0 684
ENST00000577686 SMARCD2-008 retained_intron Homo_sapiens 0 252
ENST00000577990 SMARCD2-005 protein_coding Homo_sapiens 0 357
ENST00000578234 SMARCD2-009 retained_intron Homo_sapiens 0 619
ENST00000580054 SMARCD2-007 nonsense_mediated_decay Homo_sapiens 0 327
ENST00000584400 SMARCD2-006 nonsense_mediated_decay Homo_sapiens 0 1033
ENST00000584483 SMARCD2-010 retained_intron Homo_sapiens 0 619
ENST00000613943 SMARCD2-201 protein_coding Homo_sapiens 0 2531

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