C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000091625 Lsm5 10090 - 6:56701063-56704692 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000170382 Lsm5-001 56701063-56704692 protein_coding
  ENSMUST00000175865 Lsm5-004 56701065-56704677 retained_intron
  ENSMUST00000176595 Lsm5-002 56701246-56704683 processed_transcript
  ENSMUST00000177144 Lsm5-003 56701123-56704656 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000170382ENSMUST00000175865ENSMUST00000176595
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000170382 3.235±1.06 18.963±3.71 21.998±16.02 2.023±0.82 1.914±0.85 3.290±0.48 5.387±1.16 29.458±29.90 3.777±0.64 7.739±0.89 6.152±8.69 31.953±19.47 5.002±1.28
ENSMUST00000175865 N/A N/A 0.103±0.00 0.473±0.21 0.512±0.18 N/A N/A N/A N/A N/A 0.959±0.53 0.683±0.20 0.243±0.21
ENSMUST00000176595 N/A N/A N/A N/A 0.516±0.00 N/A N/A N/A N/A N/A 0.790±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000359 CIL_000359_0002 CGP 6:56069821-56704692
CIL_0003FD CIL_0003FD_0002 CGP 6:56701063-56761911

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000071573 LSM5 LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein_coding Danio_rerio
ENSG00000106355 LSM5 LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein_coding Homo_sapiens

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