C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000170382 Lsm5-001 ENSMUSG00000091625 10090 - 6:56701063-56704692 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000170382
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000170382 3.235±1.06 18.963±3.71 21.998±16.02 2.023±0.82 1.914±0.85 3.290±0.48 5.387±1.16 29.458±29.90 3.777±0.64 7.739±0.89 6.152±8.69 31.953±19.47 5.002±1.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000359 CIL_000359_0002 CGP 6:56069821-56704692
CIL_0003FD CIL_0003FD_0002 CGP 6:56701063-56761911

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000223084 LSM5-002 nonsense_mediated_decay Homo_sapiens 0 337
ENST00000409292 LSM5-005 protein_coding Homo_sapiens 0 337
ENST00000409782 LSM5-009 protein_coding Homo_sapiens 0 331
ENST00000409909 LSM5-007 protein_coding Homo_sapiens 0 335
ENST00000409952 LSM5-008 protein_coding Homo_sapiens 0 335
ENST00000409987 LSM5-010 protein_coding Homo_sapiens 0 309
ENST00000410044 LSM5-004 protein_coding Homo_sapiens 0 335
ENST00000450169 LSM5-001 protein_coding Homo_sapiens 0 399
ENST00000468872 LSM5-006 retained_intron Homo_sapiens 8e-37 158
ENST00000480956 LSM5-003 retained_intron Homo_sapiens 0 220

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