C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000106355 LSM5 9606 - 7:32485332-32495283 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000223084 LSM5-002 32487035-32490863 nonsense_mediated_decay
  ENST00000409292 LSM5-005 32487029-32490100 protein_coding
  ENST00000409782 LSM5-009 32487040-32490380 protein_coding
  ENST00000409909 LSM5-007 32486805-32495283 protein_coding
  ENST00000409952 LSM5-008 32487063-32495249 protein_coding
  ENST00000409987 LSM5-010 32487035-32490380 protein_coding
  ENST00000410044 LSM5-004 32487035-32490361 protein_coding
  ENST00000450169 LSM5-001 32485332-32490418 protein_coding
  ENST00000468872 LSM5-006 32487035-32488061 retained_intron
  ENST00000480956 LSM5-003 32487065-32490371 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000223084ENST00000409292ENST00000409782ENST00000409909ENST00000409952ENST00000409987ENST00000410044ENST00000450169ENST00000468872ENST00000480956
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000223084 N/A N/A 0.224±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409292 3.147±0.00 9.990±0.00 N/A N/A 11.292±0.00 13.022±0.00 6.141±0.00 5.126±3.73 5.903±0.00 N/A 2.437±1.06 14.029±1.28 5.620±2.37 6.196±3.51
ENST00000409782 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.868±0.00
ENST00000409909 1.730±0.00 N/A 0.492±0.00 2.983±0.00 N/A 1.435±0.73 N/A 4.265±0.00 2.335±0.00 1.423±0.00 0.770±0.00 6.535±2.32 5.873±0.24 4.040±0.00
ENST00000409952 N/A N/A 0.807±0.00 N/A 4.475±0.00 N/A 1.346±0.00 N/A 2.872±0.00 2.483±0.00 N/A N/A N/A N/A
ENST00000409987 3.577±0.00 6.240±0.00 N/A 3.496±0.00 N/A 4.549±0.00 6.268±0.00 N/A 6.556±0.00 4.144±0.00 3.160±0.00 11.189±2.74 4.125±0.00 6.059±0.00
ENST00000410044 N/A N/A N/A 2.882±0.00 N/A 0.690±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450169 1.433±0.00 3.387±0.00 N/A 2.548±0.13 1.370±1.08 0.877±0.15 1.730±0.41 1.757±0.67 1.018±0.28 1.068±0.33 1.081±0.00 3.630±0.99 1.714±0.61 1.372±0.16
ENST00000468872 N/A N/A N/A N/A 2.274±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480956 N/A N/A N/A N/A N/A 0.261±0.00 N/A N/A N/A 0.298±0.00 N/A 2.187±0.00 N/A 1.061±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000359 CIL_000359_0001 CGP 7:31751179-32495283
CIL_0003FD CIL_0003FD_0001 CGP 7:32485332-32588721

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 TAS nucleus
GO:0005681 IEA spliceosomal complex
GO:0005829 TAS cytosol
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0043928 TAS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000071573 LSM5 LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000091625 Lsm5 LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein_coding Mus_musculus

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