C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000175865 Lsm5-004 ENSMUSG00000091625 10090 - 6:56701065-56704677 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonOvaryPlacentaTestisENSMUST00000175865
Transcript ID Brain Breast Colon Ovary Placenta Testis
ENSMUST00000175865 0.103±0.00 0.473±0.21 0.512±0.18 0.959±0.53 0.683±0.20 0.243±0.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000359 CIL_000359_0002 CGP 6:56069821-56704692
CIL_0003FD CIL_0003FD_0002 CGP 6:56701063-56761911

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000223084 LSM5-002 nonsense_mediated_decay Homo_sapiens 1.4013e-45 187
ENST00000409292 LSM5-005 protein_coding Homo_sapiens 1.4013e-45 187
ENST00000409782 LSM5-009 protein_coding Homo_sapiens 1.4013e-45 187
ENST00000409909 LSM5-007 protein_coding Homo_sapiens 1.4013e-45 187
ENST00000409952 LSM5-008 protein_coding Homo_sapiens 1.4013e-45 187
ENST00000409987 LSM5-010 protein_coding Homo_sapiens 0 219
ENST00000410044 LSM5-004 protein_coding Homo_sapiens 1.4013e-45 187
ENST00000450169 LSM5-001 protein_coding Homo_sapiens 4.2039e-45 187
ENST00000468872 LSM5-006 retained_intron Homo_sapiens 8e-37 158

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