C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000177144  |
Lsm5-003 |
ENSMUSG00000091625 |
10090 | - |
6:56701123-56704656  |
nonsense_mediated_decay |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_000359 | CIL_000359_0002 | CGP | 6:56069821-56704692 |
| CIL_0003FD | CIL_0003FD_0002 | CGP | 6:56701063-56761911 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0005515 | IPI | protein binding |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000223084
|
LSM5-002 | nonsense_mediated_decay | Homo_sapiens | 1e-37 | 161 |
|
ENST00000409292
|
LSM5-005 | protein_coding | Homo_sapiens | 5e-38 | 161 |
|
ENST00000409782
|
LSM5-009 | protein_coding | Homo_sapiens | 7e-38 | 161 |
|
ENST00000409909
|
LSM5-007 | protein_coding | Homo_sapiens | 7e-38 | 161 |
|
ENST00000409952
|
LSM5-008 | protein_coding | Homo_sapiens | 7e-38 | 161 |
|
ENST00000409987
|
LSM5-010 | protein_coding | Homo_sapiens | 0 | 230 |
|
ENST00000410044
|
LSM5-004 | protein_coding | Homo_sapiens | 7e-38 | 161 |
|
ENST00000450169
|
LSM5-001 | protein_coding | Homo_sapiens | 2e-37 | 161 |
|
ENST00000468872
|
LSM5-006 | retained_intron | Homo_sapiens | 8e-37 | 158 |
