C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029297 Slc7a11-001 ENSMUSG00000027737 10090 - 3:50364936-50443613 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029297
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029297 1.470±1.44 0.087±0.05 0.116±0.04 0.660±0.33 0.499±0.21 0.193±0.05 0.009±0.01 0.035±0.01 0.049±0.05 0.341±0.24 0.011±0.01 1.638±0.52 0.181±0.18 0.598±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001R CIL_00001R_0002 CGP 3:49743296-50443613
CIL_00001Q CIL_00001Q_0002 CGP 3:50364936-51251644

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003333 IEA amino acid transmembrane transport
GO:0005515 IEA protein binding
GO:0005791 IEA rough endoplasmic reticulum
GO:0005856 IEA cytoskeleton
GO:0005886 IEA plasma membrane
GO:0006979 IEA response to oxidative stress
GO:0007420 IEA brain development
GO:0009636 IEA response to toxic substance
GO:0009986 IEA cell surface
GO:0015171 IEA amino acid transmembrane transporter activity
GO:0016021 IEA integral component of membrane
GO:0035094 IEA response to nicotine
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0070306 IEA lens fiber cell differentiation
GO:0070527 IMP platelet aggregation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000009277 tuba1a-001 protein_coding Danio_rerio 0 425
ENSDART00000123518 tuba1b-001 protein_coding Danio_rerio 0 414
ENSDART00000077539 tuba1c-001 protein_coding Danio_rerio 0 414
ENSDART00000039443 tuba8l4-001 protein_coding Danio_rerio 0 353
ENSDART00000151271 tuba8l4-003 nonsense_mediated_decay Danio_rerio 0 278
ENSDART00000113297 tuba1b-201 protein_coding Danio_rerio 0 274
ENSDART00000151822 tuba8l4-002 protein_coding Danio_rerio 0 257
ENST00000248437 TUBA4A-001 protein_coding Homo_sapiens 0 411
ENST00000280612 SLC7A11-001 protein_coding Homo_sapiens 0 1770
ENST00000295766 TUBA1A-002 protein_coding Homo_sapiens 0 610
ENST00000301071 TUBA1A-001 protein_coding Homo_sapiens 0 610
ENST00000301072 TUBA1C-001 protein_coding Homo_sapiens 0 606
ENST00000332858 TUBA1B-002 retained_intron Homo_sapiens 0 621
ENST00000336023 TUBA1B-001 protein_coding Homo_sapiens 0 654
ENST00000392088 TUBA4A-002 protein_coding Homo_sapiens 0 411
ENST00000398989 TUBA4A-011 protein_coding Homo_sapiens 0 213
ENST00000437364 RP11-346M5.1-001 processed_pseudogene Homo_sapiens 0 366
ENST00000437634 AC012501.3-001 transcribed_processed_pseudogene Homo_sapiens 0 287
ENST00000445574 RP11-184J23.2-001 processed_pseudogene Homo_sapiens 0 361
ENST00000498660 TUBA4A-006 processed_transcript Homo_sapiens 0 255
ENST00000501221 RP11-447H19.1-001 processed_pseudogene Homo_sapiens 0 433
ENST00000505780 CTD-2158P22.4-001 processed_pseudogene Homo_sapiens 0 248
ENST00000506481 RP11-93I21.2-001 processed_pseudogene Homo_sapiens 2e-25 121
ENST00000509248 SLC7A11-002 nonsense_mediated_decay Homo_sapiens 0 424
ENST00000530835 TUBAP2-001 processed_pseudogene Homo_sapiens 0 586
ENST00000541364 TUBA1C-002 protein_coding Homo_sapiens 0 599
ENST00000546918 TUBA1A-011 protein_coding Homo_sapiens 0 318
ENST00000547476 TUBA1B-007 protein_coding Homo_sapiens 0 431
ENST00000547765 TUBA1B-006 nonsense_mediated_decay Homo_sapiens 0 621
ENST00000547939 TUBA1A-009 protein_coding Homo_sapiens 0 608
ENST00000548363 TUBA1A-015 retained_intron Homo_sapiens 0 464
ENST00000548470 TUBA1C-007 retained_intron Homo_sapiens 0 527
ENST00000549183 TUBA1C-006 protein_coding Homo_sapiens 0 466
ENST00000549870 TUBA1B-011 protein_coding Homo_sapiens 0 459
ENST00000550254 TUBA1A-014 retained_intron Homo_sapiens 0 300
ENST00000550367 TUBA1B-010 protein_coding Homo_sapiens 0 569
ENST00000550767 TUBA1A-006 protein_coding Homo_sapiens 0 604
ENST00000550811 TUBA1A-010 protein_coding Homo_sapiens 0 257
ENST00000551324 TUBA1B-008 retained_intron Homo_sapiens 0 322
ENST00000552125 TUBA1C-009 nonsense_mediated_decay Homo_sapiens 0 429
ENST00000552448 TUBA1C-003 nonsense_mediated_decay Homo_sapiens 0 599
ENST00000552924 TUBA1A-008 protein_coding Homo_sapiens 0 560
ENST00000552984 TUBA1B-009 protein_coding Homo_sapiens 0 315
ENST00000559595 RP11-522B15.6-001 processed_pseudogene Homo_sapiens 0 215
ENST00000559655 RP11-83J16.3-001 processed_pseudogene Homo_sapiens 0 359

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