C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00005H_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000145982-ENSG00000124785 CGP 9606 6:5261044-6007605
GeneTranscriptPositionBiotype
ENSG00000124785 (NRN1)
neuritin 1 		ENST00000244766 (NRN1-001) 5997999-6006967 protein_coding
ENST00000495850 (NRN1-002) 5998715-6002963 processed_transcript
ENST00000616243 (NRN1-201) 5998002-6007605 protein_coding
ENST00000622188 (NRN1-202) 5998002-6004044 protein_coding
ENSG00000145982 (FARS2)
phenylalanyl-tRNA synthetase 2, mitochondrial 		ENST00000274680 (FARS2-001) 5261526-5771580 protein_coding
ENST00000324331 (FARS2-003) 5261044-5771429 protein_coding
ENST00000445533 (FARS2-002) 5404542-5431810 protein_coding
ENST00000602691 (FARS2-004) 5261326-5368712 protein_coding
ENSG00000215057 (PKMP5)
pyruvate kinase, muscle pseudogene 5 		ENST00000454707 (PKMP5-001) 5972412-5974012 processed_pseudogene
ENSG00000216360 (RP1-182O16.2)
 ENST00000403053 (RP1-182O16.2-001) 5817421-5818366 processed_pseudogene
ENSG00000217239 (RP1-182O16.1)
 ENST00000407959 (RP1-182O16.1-001) 5788346-5788699 processed_pseudogene
ENSG00000218574 (HNRNPA1P37)
heterogeneous nuclear ribonucleoprotein A1 pseudogene 37 		ENST00000404243 (HNRNPA1P37-001) 5609227-5610195 processed_pseudogene
ENSG00000220446 (RP3-520B18.1)
 ENST00000402778 (RP3-520B18.1-001) 5291030-5291388 processed_pseudogene
ENSG00000233064 (RP3-380B8.4)
 ENST00000454882 (RP3-380B8.4-001) 5851506-5870220 lincRNA
ENSG00000239472 (RN7SL221P)
RNA, 7SL, cytoplasmic 221, pseudogene 		ENST00000466190 (RN7SL221P-201) 5918564-5918844 misc_RNA
ENSG00000269985 (RP1-232P20.1)
 ENST00000602284 (RP1-232P20.1-002) 5452468-5458075 antisense
ENST00000602674 (RP1-232P20.1-001) 5451683-5458033 antisense
ENSG00000270174 (RP1-256G22.2)
 ENST00000602500 (RP1-256G22.2-001) 5664985-5695272 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_00005H_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021420-ENSMUSG00000039114 CGP 10090 13:36117411-36734477
GeneTranscriptPositionBiotype
ENSMUSG00000021420 (Fars2)
phenylalanine-tRNA synthetase 2 (mitochondrial) 		ENSMUST00000021857 (Fars2-201) 36117411-36537592 protein_coding
ENSMUST00000099582 (Fars2-202) 36117411-36537592 protein_coding
ENSMUSG00000039114 (Nrn1)
neuritin 1 		ENSMUST00000037623 (Nrn1-001) 36725625-36734477 protein_coding
ENSMUST00000122286 (Nrn1-002) 36726458-36730668 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00005H_0001ENSG00000124785ENST00000244766ENST00000495850ENST00000616243ENST00000622188ENSG00000145982ENST00000274680ENST00000324331ENST00000445533ENST00000602691ENSG00000215057ENST00000454707ENSG00000216360ENST00000403053ENSG00000217239ENST00000407959ENSG00000218574ENST00000404243ENSG00000220446ENST00000402778ENSG00000233064ENST00000454882ENSG00000239472ENST00000466190ENSG00000269985ENST00000602284ENST00000602674ENSG00000270174ENST00000602500CIL_00005H_0002ENSMUSG00000021420ENSMUST00000021857ENSMUST00000099582ENSMUSG00000039114ENSMUST00000037623ENSMUST00000122286
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00005H_0001ENSG00000124785ENST00000244766ENST00000495850ENST00000616243ENST00000622188ENSG00000145982ENST00000274680ENST00000324331ENSG00000215057ENST00000454707ENSG00000216360ENST00000403053ENSG00000217239ENST00000407959ENSG00000218574ENST00000404243ENSG00000220446ENST00000402778ENSG00000233064ENST00000454882ENSG00000239472ENST00000466190ENSG00000269985ENST00000602284ENST00000602674ENSG00000270174ENST00000602500CIL_00005H_0002ENSMUSG00000021420ENSMUST00000021857ENSMUST00000099582ENSMUSG00000039114ENSMUST00000037623ENSMUST00000122286
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000124785 ENST00000244766 16.809±0.00 12.342±0.00 0.258±0.00 45.074±8.69 10.381±6.01 7.773±7.36 2.861±1.59 0.201±0.06 0.563±0.10 9.145±7.83 4.947±0.00 2.346±1.82 29.397±6.25 1.211±0.59
ENST00000495850 N/A N/A N/A N/A N/A 0.370±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616243 N/A 11.726±0.00 N/A 40.721±0.00 N/A 13.821±0.00 N/A 0.419±0.00 N/A N/A 0.666±0.00 N/A N/A 3.295±0.00
ENST00000622188 8.160±0.00 5.216±0.00 N/A N/A 4.440±0.00 N/A 1.357±0.00 0.661±0.00 0.454±0.00 3.140±0.00 N/A 0.670±0.00 N/A 0.947±0.00
ENSG00000145982 ENST00000274680 3.988±0.00 8.622±0.00 3.309±0.00 4.352±0.87 5.559±1.52 3.758±0.29 4.570±0.07 5.244±0.47 5.607±0.08 6.239±0.36 3.827±0.17 5.360±3.78 7.778±0.80 8.552±0.28
ENST00000324331 N/A N/A N/A 0.599±0.00 N/A 0.695±0.00 2.476±0.00 1.714±0.00 N/A N/A 3.406±0.87 N/A N/A 4.413±0.00
ENST00000445533 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602691 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000215057 ENST00000454707 0.021±0.00 0.179±0.00 N/A 0.061±0.00 0.024±0.00 0.021±0.00 0.020±0.00 0.034±0.00 0.126±0.00 0.093±0.03 0.019±0.00 0.079±0.06 N/A 0.063±0.03
ENSG00000216360 ENST00000403053 0.016±0.00 0.084±0.00 N/A 0.018±0.00 0.069±0.00 N/A 0.044±0.00 0.067±0.00 0.143±0.00 N/A 0.014±0.00 0.092±0.03 0.040±0.00 0.081±0.00
ENSG00000217239 ENST00000407959 0.403±0.00 0.452±0.00 1.463±0.00 0.200±0.00 0.091±0.00 0.382±0.00 0.129±0.00 0.366±0.00 0.041±0.00 0.209±0.00 0.204±0.00 0.114±0.01 N/A 0.252±0.13
ENSG00000218574 ENST00000404243 0.014±0.00 0.101±0.00 N/A N/A 0.049±0.02 0.130±0.09 0.039±0.00 0.205±0.18 0.232±0.00 0.200±0.13 0.534±0.00 0.041±0.02 0.020±0.00 0.039±0.00
ENSG00000220446 ENST00000402778 0.085±0.00 0.055±0.00 N/A 0.106±0.00 N/A N/A N/A N/A N/A N/A N/A 0.115±0.05 N/A N/A
ENSG00000233064 ENST00000454882 N/A N/A N/A 0.096±0.00 N/A N/A 0.042±0.00 N/A N/A N/A N/A 0.176±0.03 N/A 0.084±0.00
ENSG00000239472 ENST00000466190 0.171±0.00 N/A N/A N/A N/A N/A N/A N/A 0.107±0.00 N/A N/A N/A N/A 0.109±0.00
ENSG00000269985 ENST00000602284 0.066±0.00 N/A N/A N/A N/A N/A 0.077±0.00 N/A 0.249±0.00 0.084±0.00 0.492±0.00 0.577±0.00 N/A 0.261±0.00
ENST00000602674 N/A N/A N/A 0.065±0.00 0.290±0.00 N/A 0.014±0.00 0.205±0.00 0.560±0.00 N/A N/A 0.251±0.36 0.026±0.00 0.028±0.00
ENSG00000270174 ENST00000602500 N/A N/A N/A 0.023±0.00 N/A N/A 0.373±0.00 0.105±0.00 0.311±0.00 0.097±0.00 N/A 0.236±0.00 N/A 0.058±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021420 ENSMUST00000021857 16.085±2.85 11.340±1.69 8.867±0.96 5.920±1.75 14.799±3.70 14.282±3.98 29.191±2.05 25.128±6.27 11.381±3.22 12.029±0.83 9.522±0.75 13.796±4.44 7.068±2.17 21.305±10.31
ENSMUST00000099582 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.844±1.03 2.151±0.00 N/A
ENSMUSG00000039114 ENSMUST00000037623 4.473±0.73 0.368±0.18 14.050±0.67 31.818±6.34 1.750±0.43 1.355±0.86 2.592±0.25 0.176±0.05 87.003±49.21 6.128±1.30 0.473±0.16 22.844±21.43 1.930±1.97 0.653±0.43
ENSMUST00000122286 1.438±0.00 0.892±0.49 N/A N/A 1.332±0.63 1.023±0.57 1.148±0.00 0.103±0.01 N/A 1.804±0.00 0.379±0.00 7.257±2.64 0.386±0.01 N/A

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