C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000407959 RP1-182O16.1-001 ENSG00000217239 9606 - 6:5788346-5788699 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000407959
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000407959 0.403±0.00 0.452±0.00 1.463±0.00 0.200±0.00 0.091±0.00 0.382±0.00 0.129±0.00 0.366±0.00 0.041±0.00 0.209±0.00 0.204±0.00 0.114±0.01 0.252±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00005H CIL_00005H_0001 CGP 6:5261044-6007605

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000081679 Gm6404-201 processed_pseudogene Mus_musculus 0 392
ENSMUST00000084445 Gm10154-001 processed_pseudogene Mus_musculus 0 387
ENSMUST00000121998 Rpl34-ps1-001 processed_pseudogene Mus_musculus 0 387
ENSMUST00000079085 Rpl34-002 protein_coding Mus_musculus 0 387
ENSMUST00000062601 Rpl34-001 protein_coding Mus_musculus 0 387
ENSMUST00000135691 Rpl34-004 retained_intron Mus_musculus 0 315
ENSMUST00000104927 Gm2178-201 protein_coding Mus_musculus 0 296
ENSMUST00000133802 Rpl34-003 retained_intron Mus_musculus 0 283

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