C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000AO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000015599-ENSDARG00000056439 CGP 7955 9:53802404-53941137
GeneTranscriptPositionBiotype
ENSDARG00000015599 (xrcc5)
X-ray repair complementing defective repair in Chinese hamster cells 5 		ENSDART00000146629 (xrcc5-201) 53802404-53875770 protein_coding
ENSDARG00000056439 (march4)
membrane-associated ring finger (C3HC4) 4 		ENSDART00000078939 (march4-201) 53894546-53941137 protein_coding
CIL_0000AO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000079246-ENSG00000144583 CGP 9606 2:216107464-216372027
GeneTranscriptPositionBiotype
ENSG00000079246 (XRCC5)
X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining) 		ENST00000392132 (XRCC5-201) 216109297-216206291 protein_coding
ENST00000392133 (XRCC5-001) 216107464-216206303 protein_coding
ENST00000417391 (XRCC5-003) 216109351-216119108 protein_coding
ENST00000429133 (XRCC5-005) 216109331-216119139 processed_transcript
ENST00000451695 (XRCC5-006) 216113092-216119165 nonsense_mediated_decay
ENST00000460284 (XRCC5-010) 216116885-216205423 retained_intron
ENST00000471649 (XRCC5-008) 216130710-216141319 processed_transcript
ENST00000476360 (XRCC5-004) 216109342-216117038 retained_intron
ENST00000485763 (XRCC5-009) 216204016-216205422 retained_intron
ENST00000493706 (XRCC5-007) 216125923-216127990 retained_intron
ENSG00000144583 (MARCH4)
membrane-associated ring finger (C3HC4) 4, E3 ubiquitin protein ligase 		ENST00000273067 (MARCH4-001) 216257865-216372027 protein_coding
ENSG00000231092 (AC012513.6)
 ENST00000417481 (AC012513.6-001) 216259595-216266130 antisense
ENSG00000232970 (POLHP1)
polymerase (DNA directed), eta pseudogene 1 		ENST00000411806 (POLHP1-001) 216156342-216156811 processed_pseudogene
ENSG00000233581 (AC069155.1)
 ENST00000452736 (AC069155.1-001) 216303325-216321737 antisense
ENSG00000236478 (AC012513.4)
 ENST00000441511 (AC012513.4-001) 216174896-216176032 processed_pseudogene
ENSG00000260804 (PKI55)
DKFZp434H1419 		ENST00000562038 (PKI55-001) 216217045-216220192 lincRNA
ENSG00000279348 (RP11-566E18.1)
 ENST00000623250 (RP11-566E18.1-001) 216211404-216213519 TEC
CIL_0000AO_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026187-ENSMUSG00000039372 CGP 10090 1:72307421-72536930
GeneTranscriptPositionBiotype
ENSMUSG00000026187 (Xrcc5)
X-ray repair complementing defective repair in Chinese hamster cells 5 		ENSMUST00000027379 (Xrcc5-201) 72307421-72394952 protein_coding
ENSMUSG00000039372 (March4)
membrane-associated ring finger (C3HC4) 4 		ENSMUST00000047786 (March4-001) 72427112-72536930 protein_coding
ENSMUSG00000085812 (Gm15843)
predicted gene 15843 		ENSMUST00000146593 (Gm15843-001) 72459499-72460027 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000AO_0001ENSDARG00000015599ENSDART00000146629ENSDARG00000056439ENSDART00000078939CIL_0000AO_0002ENSG00000079246ENST00000392132ENST00000392133ENST00000417391ENST00000429133ENST00000451695ENST00000460284ENST00000471649ENST00000476360ENST00000485763ENST00000493706ENSG00000144583ENST00000273067ENSG00000231092ENST00000417481ENSG00000232970ENST00000411806ENSG00000233581ENST00000452736ENSG00000236478ENST00000441511ENSG00000260804ENST00000562038ENSG00000279348ENST00000623250CIL_0000AO_0003ENSMUSG00000026187ENSMUST00000027379ENSMUSG00000039372ENSMUST00000047786ENSMUSG00000085812ENSMUST00000146593
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000AO_0001ENSDARG00000015599ENSDART00000146629ENSDARG00000056439ENSDART00000078939CIL_0000AO_0002ENSG00000079246ENST00000392132ENST00000460284ENST00000485763ENSG00000144583ENST00000273067ENSG00000231092ENST00000417481ENSG00000232970ENST00000411806ENSG00000233581ENST00000452736ENSG00000236478ENST00000441511ENSG00000260804ENST00000562038ENSG00000279348ENST00000623250CIL_0000AO_0003ENSMUSG00000026187ENSMUST00000027379ENSMUSG00000039372ENSMUST00000047786ENSMUSG00000085812ENSMUST00000146593
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000015599 ENSDART00000146629 N/A N/A N/A 0.679±0.32 N/A N/A 0.626±0.18 1.492±0.00 0.036±0.00 N/A 0.191±0.00 N/A N/A N/A
ENSDARG00000056439 ENSDART00000078939 N/A N/A N/A 14.213±8.82 N/A N/A 0.032±0.00 N/A 0.057±0.00 N/A 0.902±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000079246 ENST00000392132 60.228±0.00 58.191±0.00 7.387±0.00 34.204±16.28 25.731±11.53 31.561±18.14 16.554±12.65 29.841±15.03 16.560±1.29 27.648±19.13 24.299±17.41 44.740±16.85 49.814±11.03 63.418±7.68
ENST00000392133 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000417391 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000429133 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000451695 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460284 N/A N/A 2.904±0.00 N/A 5.192±0.00 2.366±0.00 1.478±0.00 N/A 3.563±0.00 3.191±0.00 N/A 6.983±0.00 N/A N/A
ENST00000471649 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476360 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485763 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 77.795±0.00 N/A N/A
ENST00000493706 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000144583 ENST00000273067 0.009±0.00 N/A N/A 1.395±0.18 0.010±0.00 0.107±0.01 0.027±0.00 0.127±0.00 N/A 0.035±0.00 N/A 0.132±0.12 1.061±0.54 0.045±0.02
ENSG00000231092 ENST00000417481 0.019±0.00 0.399±0.00 N/A N/A 0.264±0.00 0.193±0.00 0.018±0.00 0.228±0.00 0.050±0.00 0.168±0.00 0.017±0.00 N/A N/A 0.053±0.00
ENSG00000232970 ENST00000411806 N/A N/A 0.656±0.00 0.144±0.00 N/A N/A 0.026±0.00 0.028±0.00 N/A N/A N/A 0.282±0.00 N/A 0.041±0.01
ENSG00000233581 ENST00000452736 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.023±0.00
ENSG00000236478 ENST00000441511 0.010±0.00 N/A 0.224±0.00 0.040±0.00 0.106±0.00 0.039±0.00 0.067±0.06 0.111±0.04 N/A N/A N/A 0.070±0.00 N/A 0.029±0.00
ENSG00000260804 ENST00000562038 1.260±0.00 3.034±0.00 1.132±0.00 13.101±4.74 2.105±1.71 0.922±0.12 1.590±0.00 2.180±1.87 0.733±0.25 1.374±0.60 3.243±1.23 2.418±2.29 1.017±0.41 1.975±0.13
ENSG00000279348 ENST00000623250 0.571±0.00 1.004±0.00 N/A 7.986±1.05 1.682±0.00 1.215±0.59 1.112±0.00 0.983±0.00 1.264±1.16 0.314±0.00 1.348±0.14 1.332±1.13 0.479±0.25 0.910±0.29
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026187 ENSMUST00000027379 2.493±1.38 0.712±0.33 8.748±0.53 4.420±0.84 1.425±0.52 1.604±0.33 2.140±0.17 7.513±0.29 5.227±2.92 2.734±0.32 7.829±1.43 4.481±4.33 8.621±4.93 2.744±0.77
ENSMUSG00000039372 ENSMUST00000047786 0.022±0.01 0.108±0.02 0.050±0.03 4.787±2.22 0.073±0.02 0.107±0.05 0.058±0.00 0.032±0.02 0.011±0.01 0.499±0.09 0.329±0.20 0.706±0.16 0.013±0.01 0.193±0.06
ENSMUSG00000085812 ENSMUST00000146593 0.211±0.00 N/A 0.485±0.40 0.328±0.13 0.182±0.06 N/A 0.094±0.00 0.102±0.00 0.245±0.30 0.134±0.00 0.089±0.00 0.316±0.23 N/A 0.109±0.00

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