C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 6921
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000161478 Gm6921-001 ENSMUSG00000090074 10090 + 8:127561435-127561869 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastLiverLungOvaryPlacentaTestisENSMUST00000161478
Transcript ID Adipose Bladder Brain Breast Liver Lung Ovary Placenta Testis
ENSMUST00000161478 0.118±0.00 0.082±0.03 0.248±0.01 0.377±0.12 0.052±0.02 0.130±0.00 0.432±0.00 0.169±0.05 0.193±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000CM CIL_0000CM_0002 CGP 8:127063893-128505462

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000233609 RPS15-006 protein_coding Homo_sapiens 0 455
ENST00000412567 RP11-389O22.5-001 processed_pseudogene Homo_sapiens 0 364
ENST00000422958 RP5-827C21.1-001 processed_pseudogene Homo_sapiens 0 405
ENST00000433675 AC007969.5-001 processed_pseudogene Homo_sapiens 0 407
ENST00000449885 RPS15P5-001 processed_pseudogene Homo_sapiens 0 387
ENST00000476363 RP11-25H11.1-001 processed_pseudogene Homo_sapiens 0 289
ENST00000493323 RP11-264F23.1-001 processed_pseudogene Homo_sapiens 0 320
ENST00000522454 CTC-340A15.1-001 processed_pseudogene Homo_sapiens 0 289
ENST00000585665 RPS15-010 protein_coding Homo_sapiens 0 436
ENST00000586096 RPS15-011 protein_coding Homo_sapiens 0 337
ENST00000586686 RPS15-009 protein_coding Homo_sapiens 0 377
ENST00000589656 RPS15-004 protein_coding Homo_sapiens 0 394
ENST00000591032 RPS15-008 protein_coding Homo_sapiens 0 377
ENST00000591804 RPS15-013 protein_coding Homo_sapiens 0 377
ENST00000592588 RPS15-001 protein_coding Homo_sapiens 0 460
ENST00000592623 RPS15-012 protein_coding Homo_sapiens 0 457
ENST00000592700 RPS15-003 retained_intron Homo_sapiens 0 377
ENST00000593052 RPS15-002 protein_coding Homo_sapiens 0 459

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