C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB40B, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000269347 RAB40B-002 ENSG00000141542 9606 - 17:82657067-82698687 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000269347
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000269347 2.023±0.00 1.695±0.00 15.962±0.41 3.103±2.81 2.779±1.32 4.680±3.22 5.892±4.41 1.537±0.00 1.382±0.69 3.119±0.06 3.827±1.40 1.465±0.61 3.993±1.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000IW CIL_0000IW_0001 CGP 17:82614562-82698728
CIL_0000IX CIL_0000IX_0001 CGP 17:82654973-82730328

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016567 IEA protein ubiquitination
GO:0035556 IEA intracellular signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106107 Rab40b-001 protein_coding Mus_musculus 0 784
ENSMUST00000135290 Rab40b-003 processed_transcript Mus_musculus 0 209
ENSMUST00000124639 Rab40b-002 processed_transcript Mus_musculus 0 209
ENSMUST00000179998 Rab40c-202 protein_coding Mus_musculus 2e-28 132
ENSMUST00000026826 Rab40c-201 protein_coding Mus_musculus 2e-28 132
ENSMUST00000164738 Rab40c-006 protein_coding Mus_musculus 2e-28 132
ENSMUST00000167018 Rab40c-005 protein_coding Mus_musculus 2e-28 132
ENSMUST00000164982 Rab40c-004 protein_coding Mus_musculus 2e-28 132
ENSMUST00000167626 Rab40c-001 protein_coding Mus_musculus 2e-28 132
ENSMUST00000166146 Rab40c-003 nonsense_mediated_decay Mus_musculus 2e-28 132
ENSMUST00000172168 Rab40c-007 processed_transcript Mus_musculus 5e-24 117

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