C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB40B, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000571995 RAB40B-001 ENSG00000141542 9606 - 17:82654973-82698728 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastLiverMuscleOvaryPlacentaENST00000571995
Transcript ID Adrenal Brain Breast Liver Muscle Ovary Placenta
ENST00000571995 0.905±0.00 2.257±0.00 1.193±0.00 0.639±0.00 0.775±0.00 1.746±0.78 0.477±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000IW CIL_0000IW_0001 CGP 17:82614562-82698728
CIL_0000IX CIL_0000IX_0001 CGP 17:82654973-82730328

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005886 IEA plasma membrane
GO:0006184 IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016567 IEA protein ubiquitination
GO:0035556 IEA intracellular signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106107 Rab40b-001 protein_coding Mus_musculus 0 987
ENSMUST00000179998 Rab40c-202 protein_coding Mus_musculus 0 527
ENSMUST00000026826 Rab40c-201 protein_coding Mus_musculus 0 527
ENSMUST00000167018 Rab40c-005 protein_coding Mus_musculus 0 527
ENSMUST00000167626 Rab40c-001 protein_coding Mus_musculus 0 527
ENSMUST00000172168 Rab40c-007 processed_transcript Mus_musculus 0 296
ENSMUST00000164982 Rab40c-004 protein_coding Mus_musculus 0 281
ENSMUST00000164738 Rab40c-006 protein_coding Mus_musculus 0 267
ENSMUST00000135290 Rab40b-003 processed_transcript Mus_musculus 0 211
ENSMUST00000124639 Rab40b-002 processed_transcript Mus_musculus 0 209
ENSMUST00000166146 Rab40c-003 nonsense_mediated_decay Mus_musculus 3e-28 132
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.00007 55

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