C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB40B, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000538809 RAB40B-005 ENSG00000141542 9606 - 17:82657911-82698662 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLiverLungMuscleOvaryENST00000538809
Transcript ID Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary
ENST00000538809 3.003±0.00 31.907±0.00 0.551±0.00 2.776±0.00 3.762±0.00 4.212±0.00 1.636±0.00 16.996±0.00 3.550±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000IW CIL_0000IW_0001 CGP 17:82614562-82698728
CIL_0000IX CIL_0000IX_0001 CGP 17:82654973-82730328

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106107 Rab40b-001 protein_coding Mus_musculus 0 427
ENSMUST00000164982 Rab40c-004 protein_coding Mus_musculus 0 285
ENSMUST00000179998 Rab40c-202 protein_coding Mus_musculus 0 279
ENSMUST00000026826 Rab40c-201 protein_coding Mus_musculus 0 279
ENSMUST00000167018 Rab40c-005 protein_coding Mus_musculus 0 279
ENSMUST00000167626 Rab40c-001 protein_coding Mus_musculus 0 279
ENSMUST00000164738 Rab40c-006 protein_coding Mus_musculus 0 267
ENSMUST00000172168 Rab40c-007 processed_transcript Mus_musculus 0 265
ENSMUST00000135290 Rab40b-003 processed_transcript Mus_musculus 0 209
ENSMUST00000124639 Rab40b-002 processed_transcript Mus_musculus 0 209
ENSMUST00000166146 Rab40c-003 nonsense_mediated_decay Mus_musculus 6e-29 132

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