C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0000JN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000011941-ENSDARG00000074921 CGP 7955 6:12709568-12781813
GeneTranscriptPositionBiotype
ENSDARG00000011941 (bmpr2a)
bone morphogenetic protein receptor, type II a (serine/threonine kinase)
ENSDART00000056764 (bmpr2a-001) 12709568-12763808 protein_coding
ENSDART00000148145 (bmpr2a-002) 12736378-12736938 retained_intron
ENSDART00000150955 (bmpr2a-003) 12737002-12780321 processed_transcript
ENSDARG00000074921 (FAM117B (2 of 2))
family with sequence similarity 117, member B
ENSDART00000090065 (FAM117B (2 of 2)-201) 12768223-12781813 protein_coding
ENSDART00000156341 (FAM117B (2 of 2)-001) 12765575-12777747 protein_coding
CIL_0000JN_0002 (Click to Hide/Show)
Notice (8): Undefined index: CIL_0000JN_0002 [APP/View/Region/show.ctp, line 46]
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]
Source ID Type Tax ID Position
ENSDARG00000020057-ENSDARG00000009839 CGP 7955 9:13235992-13489022
GeneTranscriptPositionBiotype
CIL_0000JN_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000204217-ENSG00000138439 CGP 9606 2:202376936-202769757
GeneTranscriptPositionBiotype
ENSG00000138439 (FAM117B)
family with sequence similarity 117, member B
ENST00000392238 (FAM117B-001) 202635188-202769757 protein_coding
ENST00000481658 (FAM117B-002) 202635489-202725232 retained_intron
ENSG00000204217 (BMPR2)
bone morphogenetic protein receptor, type II (serine/threonine kinase)
ENST00000374574 (BMPR2-002) 202377434-202567751 protein_coding
ENST00000374580 (BMPR2-001) 202376936-202567751 protein_coding
ENST00000479069 (BMPR2-003) 202464826-202475139 processed_transcript
ENSG00000223619 (AC009960.1)
ENST00000411522 (AC009960.1-001) 202614214-202614704 unprocessed_pseudogene
ENSG00000227454 (MTND4P30)
MT-ND4 pseudogene 30
ENST00000450281 (MTND4P30-001) 202617983-202618881 unprocessed_pseudogene
ENSG00000233134 (AC009960.7)
ENST00000416968 (AC009960.7-001) 202617284-202617627 unprocessed_pseudogene
ENSG00000233311 (AC009960.3)
ENST00000430139 (AC009960.3-001) 202619185-202619896 processed_pseudogene
ENSG00000233888 (AC009960.2)
ENST00000424336 (AC009960.2-001) 202614853-202615529 unprocessed_pseudogene
ENSG00000235433 (AC009960.4)
ENST00000431030 (AC009960.4-001) 202615769-202616440 unprocessed_pseudogene
ENSG00000236047 (AC073410.1)
ENST00000435125 (AC073410.1-001) 202520401-202520989 processed_pseudogene
ENSG00000237542 (AC009960.5)
ENST00000443775 (AC009960.5-001) 202616700-202617212 unprocessed_pseudogene
ENSG00000241221 (AC009960.6)
ENST00000414607 (AC009960.6-001) 202617695-202617987 unprocessed_pseudogene
ENSG00000270915 (RP11-27M5.1)
ENST00000603240 (RP11-27M5.1-001) 202505012-202505343 processed_pseudogene
CIL_0000JN_0004 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000067336-ENSMUSG00000041040 CGP 10090 1:59763400-59985346
GeneTranscriptPositionBiotype
ENSMUSG00000026018 (Ica1l)
islet cell autoantigen 1-like
ENSMUST00000027172 (Ica1l-001) 59989068-60043087 protein_coding
ENSMUST00000185891 (Ica1l-006) 59982490-59990927 processed_transcript
ENSMUST00000186970 (Ica1l-003) 60020791-60043184 processed_transcript
ENSMUST00000187364 (Ica1l-005) 60015255-60022615 retained_intron
ENSMUST00000189776 (Ica1l-004) 59991124-60028229 protein_coding
ENSMUST00000191251 (Ica1l-002) 59989075-60043122 protein_coding
ENSMUSG00000041040 (Fam117b)
family with sequence similarity 117, member B
ENSMUST00000036540 (Fam117b-001) 59913006-59985346 protein_coding
ENSMUST00000151630 (Fam117b-002) 59970680-59981515 nonsense_mediated_decay
ENSMUST00000189790 (Fam117b-003) 59979181-59980938 retained_intron
ENSMUSG00000067336 (Bmpr2)
bone morphogenetic protein receptor, type II (serine/threonine kinase)
ENSMUST00000087435 (Bmpr2-001) 59763400-59879014 protein_coding
ENSMUST00000186246 (Bmpr2-002) 59851477-59856195 retained_intron
ENSMUST00000190659 (Bmpr2-003) 59850665-59852351 retained_intron
ENSMUSG00000100901 (RP23-27C10.4)
predicted gene, 18829
ENSMUST00000188150 (RP23-27C10.4-001) 59950403-59952464 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000JN_0001ENSDARG00000011941ENSDART00000056764ENSDART00000148145ENSDART00000150955ENSDARG00000074921ENSDART00000090065ENSDART00000156341CIL_0000JN_0003ENSG00000138439ENST00000392238ENST00000481658ENSG00000204217ENST00000374574ENST00000374580ENST00000479069ENSG00000223619ENST00000411522ENSG00000227454ENST00000450281ENSG00000233134ENST00000416968ENSG00000233311ENST00000430139ENSG00000233888ENST00000424336ENSG00000235433ENST00000431030ENSG00000236047ENST00000435125ENSG00000237542ENST00000443775ENSG00000241221ENST00000414607ENSG00000270915ENST00000603240CIL_0000JN_0004ENSMUSG00000026018ENSMUST00000027172ENSMUST00000185891ENSMUST00000186970ENSMUST00000187364ENSMUST00000189776ENSMUST00000191251ENSMUSG00000041040ENSMUST00000036540ENSMUST00000151630ENSMUST00000189790ENSMUSG00000067336ENSMUST00000087435ENSMUST00000186246ENSMUST00000190659ENSMUSG00000100901ENSMUST00000188150
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000JN_0001ENSDARG00000011941ENSDART00000056764ENSDART00000148145ENSDARG00000074921ENSDART00000090065CIL_0000JN_0003ENSG00000138439ENST00000392238ENST00000481658ENSG00000204217ENST00000374574ENST00000374580ENSG00000223619ENST00000411522ENSG00000227454ENST00000450281ENSG00000233134ENST00000416968ENSG00000233311ENST00000430139ENSG00000233888ENST00000424336ENSG00000235433ENST00000431030ENSG00000236047ENST00000435125ENSG00000237542ENST00000443775ENSG00000241221ENST00000414607ENSG00000270915ENST00000603240CIL_0000JN_0004ENSMUSG00000026018ENSMUST00000027172ENSMUST00000185891ENSMUST00000189776ENSMUST00000191251ENSMUSG00000041040ENSMUST00000036540ENSMUSG00000067336ENSMUST00000087435ENSMUSG00000100901ENSMUST00000188150
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000011941 ENSDART00000056764 N/A N/A N/A N/A N/A N/A 1.200±0.17 N/A 0.169±0.00 N/A 0.960±0.00 N/A N/A N/A
ENSDART00000148145 N/A N/A N/A N/A N/A N/A N/A N/A 0.575±0.00 N/A N/A N/A N/A N/A
ENSDART00000150955 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000074921 ENSDART00000090065 N/A N/A N/A 19.468±7.89 N/A N/A N/A N/A 0.057±0.00 N/A N/A N/A N/A N/A
ENSDART00000156341 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138439 ENST00000392238 2.507±0.00 1.830±0.00 1.874±0.00 2.522±0.09 1.786±0.01 2.166±0.17 0.497±0.17 1.506±0.85 1.005±0.61 1.402±0.05 0.618±0.47 1.759±0.31 1.976±0.85 5.615±0.95
ENST00000481658 N/A N/A N/A N/A N/A N/A N/A 2.218±0.00 N/A N/A 0.971±0.00 N/A N/A N/A
ENSG00000204217 ENST00000374574 N/A 1.049±0.00 N/A N/A 0.898±0.00 N/A N/A N/A 0.204±0.00 N/A N/A N/A N/A N/A
ENST00000374580 10.523±0.00 5.571±0.00 5.107±0.00 11.048±0.96 7.616±0.90 5.494±3.01 6.538±2.36 5.478±1.54 4.881±3.47 19.452±2.17 3.106±1.18 5.494±0.82 6.680±1.42 4.186±3.56
ENST00000479069 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000223619 ENST00000411522 N/A 0.063±0.00 N/A 0.043±0.00 0.020±0.00 N/A 0.214±0.00 0.141±0.00 0.084±0.00 0.016±0.00 0.200±0.00 N/A N/A N/A
ENSG00000227454 ENST00000450281 N/A 0.045±0.00 N/A 0.146±0.00 0.087±0.00 0.123±0.00 0.072±0.00 0.073±0.00 0.012±0.00 0.067±0.06 0.117±0.00 0.096±0.00 N/A 0.219±0.08
ENSG00000233134 ENST00000416968 N/A 0.090±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000233311 ENST00000430139 N/A 0.022±0.00 N/A N/A N/A 0.197±0.00 0.318±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000233888 ENST00000424336 N/A 0.228±0.00 N/A 0.034±0.00 N/A N/A N/A N/A N/A N/A N/A 0.039±0.00 N/A 0.138±0.00
ENSG00000235433 ENST00000431030 N/A 0.412±0.00 0.151±0.00 N/A 0.016±0.00 N/A N/A N/A N/A 1.069±0.00 N/A 0.074±0.03 N/A 0.110±0.00
ENSG00000236047 ENST00000435125 0.184±0.00 N/A 1.733±0.00 0.256±0.14 1.419±1.13 1.941±0.00 0.225±0.04 0.113±0.00 2.962±0.00 2.505±1.31 0.815±0.67 0.792±0.60 0.630±0.57 1.334±1.18
ENSG00000237542 ENST00000443775 N/A 0.152±0.00 N/A 0.243±0.00 N/A N/A N/A N/A 0.082±0.00 N/A N/A N/A N/A 0.116±0.00
ENSG00000241221 ENST00000414607 N/A 0.407±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000270915 ENST00000603240 N/A 0.264±0.00 N/A 0.039±0.00 0.109±0.00 0.136±0.00 N/A N/A N/A 0.920±0.00 N/A N/A N/A 0.242±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026018 ENSMUST00000027172 N/A N/A N/A 5.930±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.839±2.61
ENSMUST00000185891 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.717±0.00 N/A N/A
ENSMUST00000186970 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187364 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189776 N/A N/A N/A 14.767±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.719±0.00
ENSMUST00000191251 N/A N/A 1.595±0.00 7.219±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.657±3.62
ENSMUSG00000041040 ENSMUST00000036540 4.680±1.10 13.291±6.93 3.294±0.64 15.048±7.02 7.158±3.88 13.065±3.03 2.273±0.46 6.925±1.07 1.757±0.92 15.420±3.45 1.062±0.12 8.507±4.05 3.803±1.52 9.103±3.08
ENSMUST00000151630 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000067336 ENSMUST00000087435 7.600±1.84 8.929±1.64 2.572±0.81 5.622±2.18 5.610±0.87 3.701±0.47 5.924±0.71 5.487±0.39 1.589±0.90 49.990±1.09 2.837±1.71 18.485±3.52 6.381±2.88 0.968±0.32
ENSMUST00000186246 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190659 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000100901 ENSMUST00000188150 0.051±0.01 N/A 0.025±0.00 0.169±0.04 0.058±0.01 0.146±0.05 0.050±0.01 0.103±0.06 0.027±0.02 0.157±0.10 N/A N/A N/A 0.050±0.02

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