C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000603240 RP11-27M5.1-001 ENSG00000270915 9606 - 2:202505012-202505343 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonLungTestisENST00000603240
Transcript ID Adrenal Brain Breast Colon Lung Testis
ENST00000603240 0.264±0.00 0.039±0.00 0.109±0.00 0.136±0.00 0.920±0.00 0.242±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020S CIL_00020S_0001 CGP 2:202265716-202567751
CIL_0000JN CIL_0000JN_0003 CGP 2:202376936-202769757

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000179671 Gm10257-201 processed_pseudogene Mus_musculus 3.99931e-42 174
ENSMUST00000120752 Gm3835-001 processed_pseudogene Mus_musculus 2e-39 165
ENSMUST00000162814 H3f3a-003 protein_coding Mus_musculus 9e-39 163
ENSMUST00000161308 H3f3a-001 protein_coding Mus_musculus 9e-39 163
ENSMUST00000081026 H3f3a-006 protein_coding Mus_musculus 3e-38 161
ENSMUST00000119459 H3f3c-001 processed_pseudogene Mus_musculus 1e-37 159
ENSMUST00000077016 Gm6421-201 processed_pseudogene Mus_musculus 4e-37 158
ENSMUST00000179566 Gm6132-201 processed_pseudogene Mus_musculus 3e-33 145
ENSMUST00000121118 Gm13529-001 processed_pseudogene Mus_musculus 4e-32 141
ENSMUST00000169993 Gm17136-001 processed_pseudogene Mus_musculus 2e-31 139
ENSMUST00000171334 Gm4938-201 processed_pseudogene Mus_musculus 2e-30 135
ENSMUST00000121683 Gm12950-001 processed_pseudogene Mus_musculus 7e-30 134
ENSMUST00000119660 Gm8757-001 processed_pseudogene Mus_musculus 9e-29 130
ENSMUST00000118436 Gm13349-001 processed_pseudogene Mus_musculus 3e-28 128
ENSMUST00000117894 Gm14529-001 processed_pseudogene Mus_musculus 4e-27 124
ENSMUST00000174739 Gm20545-001 processed_pseudogene Mus_musculus 4e-27 124
ENSMUST00000159789 H3f3a-007 protein_coding Mus_musculus 2e-26 122
ENSMUST00000137042 Gm15905-001 processed_pseudogene Mus_musculus 4e-22 108

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