C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000R8_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000154719-ENSG00000154721 CGP 9606 21:25585656-25717562
GeneTranscriptPositionBiotype
ENSG00000154719 (MRPL39)
mitochondrial ribosomal protein L39 		ENST00000307301 (MRPL39-002) 25585656-25607517 protein_coding
ENST00000352957 (MRPL39-001) 25585656-25607517 protein_coding
ENST00000419219 (MRPL39-003) 25592812-25607484 protein_coding
ENSG00000154721 (JAM2)
junctional adhesion molecule 2 		ENST00000312957 (JAM2-201) 25639282-25717552 protein_coding
ENST00000400532 (JAM2-003) 25639272-25714573 protein_coding
ENST00000460679 (JAM2-007) 25689866-25714731 nonsense_mediated_decay
ENST00000471689 (JAM2-009) 25712019-25714889 retained_intron
ENST00000477351 (JAM2-008) 25711388-25714739 processed_transcript
ENST00000480456 (JAM2-001) 25639272-25717562 protein_coding
ENST00000492962 (JAM2-006) 25702178-25710179 retained_intron
ENSG00000154723 (ATP5J)
ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 		ENST00000284971 (ATP5J-001) 25724480-25734972 protein_coding
ENST00000400087 (ATP5J-006) 25724480-25735646 protein_coding
ENST00000400090 (ATP5J-005) 25724480-25735639 protein_coding
ENST00000400093 (ATP5J-002) 25724480-25735673 protein_coding
ENST00000400094 (ATP5J-007) 25724480-25734904 protein_coding
ENST00000400099 (ATP5J-004) 25716503-25735027 protein_coding
ENST00000457143 (ATP5J-003) 25724480-25735033 protein_coding
ENST00000486002 (ATP5J-008) 25724698-25734904 retained_intron
ENSG00000227054 (FDX1P2)
ferredoxin 1 pseudogene 2 		ENST00000450769 (FDX1P2-001) 25692180-25692554 processed_pseudogene
ENSG00000237731 (RNGTTP1)
RNA guanylyltransferase and 5'-phosphatase pseudogene 1 		ENST00000420965 (RNGTTP1-001) 25643489-25644216 processed_pseudogene
ENSG00000277686 (AP000225.1)
 ENST00000620129 (AP000225.1-201) 25681662-25681758 miRNA
CIL_0000R8_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022889-ENSMUSG00000053062 CGP 10090 16:84717576-84825928
GeneTranscriptPositionBiotype
ENSMUSG00000022889 (Mrpl39)
mitochondrial ribosomal protein L39 		ENSMUST00000116584 (Mrpl39-001) 84717576-84735742 protein_coding
ENSMUST00000133901 (Mrpl39-002) 84734168-84735230 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000R8_0001ENSG00000154719ENST00000307301ENST00000352957ENST00000419219ENSG00000154721ENST00000312957ENST00000400532ENST00000460679ENST00000471689ENST00000477351ENST00000480456ENST00000492962ENSG00000154723ENST00000284971ENST00000400087ENST00000400090ENST00000400093ENST00000400094ENST00000400099ENST00000457143ENST00000486002ENSG00000227054ENST00000450769ENSG00000237731ENST00000420965ENSG00000277686ENST00000620129CIL_0000R8_0002ENSMUSG00000022889ENSMUST00000116584ENSMUST00000133901
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000R8_0001ENSG00000154719ENST00000307301ENST00000352957ENST00000419219ENSG00000154721ENST00000312957ENST00000400532ENST00000460679ENST00000480456ENSG00000154723ENST00000284971ENST00000400090ENST00000457143ENSG00000227054ENST00000450769ENSG00000237731ENST00000420965ENSG00000277686ENST00000620129CIL_0000R8_0002ENSMUSG00000022889ENSMUST00000116584ENSMUST00000133901
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000154719 ENST00000307301 N/A N/A N/A N/A 0.709±0.00 N/A N/A N/A N/A 0.509±0.00 N/A N/A N/A N/A
ENST00000352957 6.448±0.00 13.587±0.00 0.810±0.00 8.422±0.49 6.568±3.50 7.309±3.42 7.655±3.10 10.465±4.17 11.725±0.00 2.908±0.81 5.997±1.85 14.477±9.66 14.403±6.98 63.907±19.84
ENST00000419219 2.795±0.00 N/A 1.747±0.00 N/A 1.762±0.00 2.707±0.00 4.830±0.73 3.848±0.00 N/A N/A 1.951±0.00 N/A N/A 17.813±0.00
ENSG00000154721 ENST00000312957 N/A N/A N/A N/A N/A 12.323±0.00 N/A N/A N/A N/A 1.486±0.00 N/A N/A 6.328±0.00
ENST00000400532 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 41.522±1.56 N/A
ENST00000460679 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 51.044±4.71 N/A
ENST00000471689 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477351 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480456 6.081±0.00 7.372±0.00 N/A 7.664±2.47 5.807±3.30 7.546±5.60 3.043±0.00 N/A 3.120±0.00 7.547±4.62 N/A 8.802±4.38 26.392±8.39 12.285±0.00
ENST00000492962 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000154723 ENST00000284971 82.671±0.00 80.218±0.00 14.034±0.00 72.619±45.80 75.849±59.41 106.260±89.76 240.446±194.60 101.945±80.14 77.608±50.28 43.097±25.87 74.074±10.54 81.215±40.94 112.463±10.51 117.028±0.00
ENST00000400087 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000400090 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 28.594±0.00 N/A N/A
ENST00000400093 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000400094 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000400099 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457143 N/A N/A N/A 23.858±0.00 N/A N/A N/A 40.733±0.00 N/A N/A 23.838±0.00 N/A N/A N/A
ENST00000486002 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000227054 ENST00000450769 N/A N/A N/A 0.030±0.00 N/A 0.108±0.00 N/A N/A 1.198±0.00 N/A N/A N/A N/A 0.058±0.00
ENSG00000237731 ENST00000420965 N/A N/A N/A N/A 0.372±0.36 0.385±0.00 0.075±0.00 0.474±0.00 0.137±0.00 0.217±0.00 0.150±0.09 0.077±0.00 0.034±0.00 N/A
ENSG00000277686 ENST00000620129 N/A N/A N/A N/A N/A N/A 0.365±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022889 ENSMUST00000116584 4.632±1.40 2.278±0.19 7.877±0.85 8.510±1.08 2.125±0.94 1.277±0.83 7.051±0.84 8.019±2.16 9.433±4.64 3.535±1.56 6.040±1.71 3.697±5.73 10.034±3.14 17.965±10.51
ENSMUST00000133901 N/A 26.625±4.32 N/A N/A 3.019±0.00 7.872±3.55 N/A 10.263±2.49 30.050±2.76 3.598±1.12 N/A 5.282±1.44 N/A N/A

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