C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: junctional adhesion molecule 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000480456 JAM2-001 ENSG00000154721 9606 + 21:25639272-25717562 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungOvaryPlacentaTestisENST00000480456
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Ovary Placenta Testis
ENST00000480456 6.081±0.00 7.372±0.00 7.664±2.47 5.807±3.30 7.546±5.60 3.043±0.00 3.120±0.00 7.547±4.62 8.802±4.38 26.392±8.39 12.285±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000R8 CIL_0000R8_0001 CGP 21:25585656-25717562
CIL_0000ML CIL_0000ML_0002 CGP 21:25639272-25735673

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005886 TAS plasma membrane
GO:0005887 NAS integral component of plasma membrane
GO:0005923 IEA tight junction
GO:0007596 TAS blood coagulation
GO:0016337 NAS single organismal cell-cell adhesion
GO:0030198 TAS extracellular matrix organization
GO:0050900 TAS leukocyte migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114195 Jam2-001 protein_coding Mus_musculus 0 872
ENSMUST00000138054 Jam2-002 processed_transcript Mus_musculus 0 555
ENSMUST00000115797 Arid1b-201 protein_coding Mus_musculus 0.00002 57
ENSMUST00000092723 Arid1b-002 protein_coding Mus_musculus 0.00002 57

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