C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000SR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000147257-ENSG00000203952 CGP 9606 X:133535745-134246207
GeneTranscriptPositionBiotype
ENSG00000147257 (GPC3)
glypican 3 		ENST00000370818 (GPC3-001) 133535745-133985895 protein_coding
ENST00000394299 (GPC3-201) 133535754-133985646 protein_coding
ENST00000406757 (GPC3-002) 133596366-133753702 protein_coding
ENSG00000203952 (CCDC160)
coiled-coil domain containing 160 		ENST00000370809 (CCDC160-201) 134237047-134245778 protein_coding
ENST00000517294 (CCDC160-001) 134237047-134246207 protein_coding
ENSG00000224908 (TIMM8BP2)
translocase of inner mitochondrial membrane 8B pseudogene 2 		ENST00000445940 (TIMM8BP2-001) 134166682-134166932 processed_pseudogene
ENSG00000227008 (RP3-417G15.1)
 ENST00000426577 (RP3-417G15.1-001) 133670971-133671386 processed_pseudogene
ENSG00000233260 (RPSAP63)
ribosomal protein SA pseudogene 63 		ENST00000412013 (RPSAP63-001) 133762796-133763683 processed_pseudogene
CIL_0000SR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000055653-ENSMUSG00000073207 CGP 10090 X:52272426-52799468
GeneTranscriptPositionBiotype
ENSMUSG00000055110 (A630012P03Rik)
RIKEN cDNA A630012P03 gene 		ENSMUST00000068507 (A630012P03Rik-201) 52575843-52619047 antisense
ENSMUST00000114854 (A630012P03Rik-001) 52575843-52619047 antisense
ENSMUSG00000055653 (Gpc3)
glypican 3 		ENSMUST00000069360 (Gpc3-001) 52272426-52613921 protein_coding
ENSMUST00000114857 (Gpc3-002) 52387664-52613950 protein_coding
ENSMUSG00000073207 (Ccdc160)
coiled-coil domain containing 160 		ENSMUST00000101588 (Ccdc160-001) 52791200-52799468 protein_coding
ENSMUSG00000081843 (Gm7851)
predicted gene 7851 		ENSMUST00000117574 (Gm7851-001) 52782694-52783016 processed_pseudogene
ENSMUSG00000083621 (Gm14586)
predicted gene 14586 		ENSMUST00000119571 (Gm14586-001) 52772342-52772749 processed_pseudogene
ENSMUSG00000086704 (Gm14582)
predicted gene 14582 		ENSMUST00000141697 (Gm14582-001) 52296181-52333679 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000SR_0001ENSG00000147257ENST00000370818ENST00000394299ENST00000406757ENSG00000203952ENST00000370809ENST00000517294ENSG00000224908ENST00000445940ENSG00000227008ENST00000426577ENSG00000233260ENST00000412013CIL_0000SR_0002ENSMUSG00000055110ENSMUST00000068507ENSMUST00000114854ENSMUSG00000055653ENSMUST00000069360ENSMUST00000114857ENSMUSG00000073207ENSMUST00000101588ENSMUSG00000081843ENSMUST00000117574ENSMUSG00000083621ENSMUST00000119571ENSMUSG00000086704ENSMUST00000141697
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000SR_0001ENSG00000147257ENST00000370818ENST00000394299ENST00000406757ENSG00000203952ENST00000370809ENST00000517294ENSG00000224908ENST00000445940ENSG00000227008ENST00000426577ENSG00000233260ENST00000412013CIL_0000SR_0002ENSMUSG00000055110ENSMUST00000068507ENSMUST00000114854ENSMUSG00000055653ENSMUST00000069360ENSMUST00000114857ENSMUSG00000073207ENSMUST00000101588ENSMUSG00000081843ENSMUST00000117574ENSMUSG00000083621ENSMUST00000119571ENSMUSG00000086704ENSMUST00000141697
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000147257 ENST00000370818 48.222±0.00 5.749±0.00 7.306±0.00 0.343±0.07 21.488±12.54 12.048±10.96 2.160±1.38 15.130±15.00 2.201±1.89 52.009±42.40 1.992±0.00 9.311±8.63 207.368±14.84 3.766±1.41
ENST00000394299 N/A N/A N/A N/A N/A 0.568±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000406757 17.265±0.00 3.619±0.00 N/A N/A 8.593±5.93 6.977±0.00 0.421±0.00 0.316±0.00 N/A 3.349±0.00 0.225±0.00 10.303±10.08 158.969±0.00 2.191±0.00
ENSG00000203952 ENST00000370809 0.084±0.00 N/A N/A 0.293±0.05 0.070±0.00 0.186±0.00 N/A 0.627±0.00 0.075±0.00 0.351±0.30 N/A 0.044±0.03 0.101±0.08 1.323±0.74
ENST00000517294 N/A 0.085±0.00 0.322±0.00 0.342±0.00 0.126±0.00 N/A 0.014±0.01 2.289±0.00 0.137±0.00 0.066±0.00 0.276±0.00 0.109±0.03 N/A 0.891±0.00
ENSG00000224908 ENST00000445940 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.073±0.00
ENSG00000227008 ENST00000426577 N/A N/A N/A N/A 0.117±0.03 0.228±0.00 N/A 0.030±0.00 N/A N/A 0.119±0.04 0.323±0.04 N/A N/A
ENSG00000233260 ENST00000412013 N/A 0.687±0.00 N/A N/A 0.298±0.00 N/A N/A N/A N/A 0.741±0.00 N/A 0.045±0.00 N/A 0.311±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000055110 ENSMUST00000068507 0.013±0.00 N/A 0.002±0.00 N/A 0.019±0.00 N/A N/A N/A 0.011±0.00 0.012±0.00 N/A 0.034±0.03 0.080±0.07 N/A
ENSMUST00000114854 0.010±0.00 N/A 0.002±0.00 N/A 0.019±0.00 N/A N/A N/A 0.011±0.00 0.012±0.00 N/A 0.034±0.03 0.009±0.00 N/A
ENSMUSG00000055653 ENSMUST00000069360 14.248±3.10 7.245±1.83 24.570±3.30 11.644±7.78 19.724±8.03 2.132±0.69 6.111±1.83 12.460±2.11 105.081±108.71 43.150±13.50 1.935±0.30 13.970±9.15 90.639±92.82 0.496±0.21
ENSMUST00000114857 10.066±5.12 35.140±5.05 N/A 3.662±0.26 36.574±24.46 7.510±1.48 2.002±0.65 6.452±3.98 7.153±15.24 78.712±20.75 N/A 45.251±7.11 N/A 0.389±0.14
ENSMUSG00000073207 ENSMUST00000101588 0.150±0.03 0.660±0.28 0.700±0.02 0.866±0.36 0.079±0.05 0.076±0.00 0.054±0.04 0.877±0.18 0.066±0.02 0.196±0.09 0.055±0.03 1.696±2.09 2.108±1.33 1.773±1.08
ENSMUSG00000081843 ENSMUST00000117574 N/A N/A N/A N/A N/A N/A N/A 0.177±0.00 N/A N/A N/A N/A N/A 0.196±0.01
ENSMUSG00000083621 ENSMUST00000119571 5.639±1.33 2.135±0.92 14.449±5.94 4.689±3.29 3.691±2.32 5.159±3.50 3.713±0.99 6.702±2.95 11.187±6.86 2.813±0.88 1.479±0.33 3.850±2.53 1.302±1.15 4.154±0.75
ENSMUSG00000086704 ENSMUST00000141697 0.059±0.02 N/A N/A N/A 0.129±0.08 N/A N/A N/A 0.046±0.01 N/A 0.024±0.01 0.117±0.10 0.048±0.02 0.050±0.00

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