C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000U7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000005844-ENSG00000169957 CGP 9606 16:30472658-30526821
GeneTranscriptPositionBiotype
ENSG00000005844 (ITGAL)
integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide) 		ENST00000356798 (ITGAL-001) 30472658-30523185 protein_coding
ENST00000358164 (ITGAL-002) 30472729-30522968 protein_coding
ENST00000433423 (ITGAL-004) 30472751-30521779 protein_coding
ENST00000562020 (ITGAL-021) 30504872-30506772 retained_intron
ENST00000562652 (ITGAL-010) 30472719-30474607 nonsense_mediated_decay
ENST00000562857 (ITGAL-003) 30472746-30483964 nonsense_mediated_decay
ENST00000563615 (ITGAL-020) 30499172-30510395 nonsense_mediated_decay
ENST00000564118 (ITGAL-007) 30472750-30483964 protein_coding
ENST00000564632 (ITGAL-023) 30519756-30522243 retained_intron
ENST00000564935 (ITGAL-017) 30489000-30494856 retained_intron
ENST00000565348 (ITGAL-012) 30472746-30483964 processed_transcript
ENST00000565864 (ITGAL-011) 30472746-30479190 nonsense_mediated_decay
ENST00000566149 (ITGAL-015) 30483891-30489304 retained_intron
ENST00000566267 (ITGAL-022) 30509359-30517070 processed_transcript
ENST00000568012 (ITGAL-016) 30488883-30496201 processed_transcript
ENST00000568926 (ITGAL-009) 30472745-30510414 nonsense_mediated_decay
ENST00000568987 (ITGAL-018) 30496432-30504219 retained_intron
ENST00000569570 (ITGAL-005) 30472722-30475402 processed_transcript
ENST00000569725 (ITGAL-008) 30474001-30479174 protein_coding
ENSG00000169957 (ZNF768)
zinc finger protein 768 		ENST00000380412 (ZNF768-001) 30524001-30526589 protein_coding
ENST00000562803 (ZNF768-002) 30524133-30526821 protein_coding
ENSG00000251706 (RNU7-61P)
RNA, U7 small nuclear 61 pseudogene 		ENST00000515897 (RNU7-61P-201) 30483135-30483195 snRNA
ENSG00000260487 (RP11-297C4.3)
 ENST00000562525 (RP11-297C4.3-001) 30480588-30481346 antisense
ENSG00000261346 (RP11-297C4.2)
 ENST00000569459 (RP11-297C4.2-001) 30477180-30489353 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0000U7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030830-ENSMUSG00000047371 CGP 10090 7:127296260-127345314
GeneTranscriptPositionBiotype
ENSMUSG00000030830 (Itgal)
integrin alpha L 		ENSMUST00000106306 (Itgal-001) 127296291-127335137 protein_coding
ENSMUST00000117762 (Itgal-002) 127296260-127335137 protein_coding
ENSMUST00000118405 (Itgal-004) 127309518-127335137 protein_coding
ENSMUST00000120857 (Itgal-003) 127296315-127331291 protein_coding
ENSMUST00000170971 (Itgal-201) 127296410-127333728 protein_coding
ENSMUSG00000047371 (Zfp768)
zinc finger protein 768 		ENSMUST00000060783 (Zfp768-201) 127342797-127345314 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000U7_0001ENSG00000005844ENST00000356798ENST00000358164ENST00000433423ENST00000562020ENST00000562652ENST00000562857ENST00000563615ENST00000564118ENST00000564632ENST00000564935ENST00000565348ENST00000565864ENST00000566149ENST00000566267ENST00000568012ENST00000568926ENST00000568987ENST00000569570ENST00000569725ENSG00000169957ENST00000380412ENST00000562803ENSG00000251706ENST00000515897ENSG00000260487ENST00000562525ENSG00000261346ENST00000569459CIL_0000U7_0002ENSMUSG00000030830ENSMUST00000106306ENSMUST00000117762ENSMUST00000118405ENSMUST00000120857ENSMUST00000170971ENSMUSG00000047371ENSMUST00000060783
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000U7_0001ENSG00000005844ENST00000356798ENST00000358164ENST00000433423ENST00000564118ENST00000564632ENST00000564935ENST00000565348ENST00000566149ENST00000566267ENST00000568012ENST00000568987ENSG00000169957ENST00000380412ENST00000562803ENSG00000251706ENST00000515897ENSG00000260487ENST00000562525ENSG00000261346ENST00000569459CIL_0000U7_0002ENSMUSG00000030830ENSMUST00000106306ENSMUST00000117762ENSMUST00000118405ENSMUST00000120857ENSMUST00000170971ENSMUSG00000047371ENSMUST00000060783
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000005844 ENST00000356798 0.158±0.00 8.538±0.00 N/A 0.065±0.03 0.530±0.00 N/A 0.094±0.05 1.063±0.00 0.211±0.00 8.388±6.29 N/A 0.361±0.00 0.889±0.09 N/A
ENST00000358164 0.750±0.00 5.006±0.00 N/A N/A 0.812±0.00 N/A 0.038±0.00 N/A 0.698±0.00 N/A 0.087±0.00 0.580±0.00 1.301±0.65 0.398±0.00
ENST00000433423 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.540±0.00 N/A 0.769±0.00
ENST00000562020 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562652 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562857 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563615 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564118 N/A N/A N/A N/A N/A N/A N/A N/A 1.521±0.00 N/A N/A N/A N/A N/A
ENST00000564632 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.790±0.00 4.705±0.00 1.055±0.00
ENST00000564935 N/A N/A N/A 0.488±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565348 N/A N/A 0.144±0.00 1.012±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565864 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566149 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.670±0.00
ENST00000566267 N/A N/A 0.161±0.00 0.442±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568012 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.259±0.00 N/A N/A N/A
ENST00000568926 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568987 N/A N/A 0.665±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569570 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569725 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000169957 ENST00000380412 5.816±0.00 4.927±0.00 0.809±0.00 4.707±0.00 4.831±4.15 7.047±5.38 7.942±6.40 17.139±0.00 2.307±0.73 4.478±3.41 9.762±2.93 12.803±7.18 9.993±1.31 17.755±8.76
ENST00000562803 7.489±0.00 4.373±0.00 N/A 4.358±0.00 9.418±0.00 13.569±0.00 6.955±0.00 5.382±1.37 6.088±0.00 6.036±0.00 16.238±0.00 18.949±4.94 10.698±1.44 8.185±0.00
ENSG00000251706 ENST00000515897 3.082±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000260487 ENST00000562525 0.605±0.00 1.194±0.00 N/A 0.333±0.00 0.519±0.16 0.719±0.00 0.253±0.01 1.201±0.00 0.797±0.61 N/A N/A 0.323±0.01 0.506±0.00 0.270±0.07
ENSG00000261346 ENST00000569459 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.194±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030830 ENSMUST00000106306 1.279±0.54 0.679±0.22 0.591±0.16 N/A 9.816±3.41 1.438±0.35 0.850±0.42 1.131±0.38 2.005±0.80 8.675±0.93 0.037±0.00 1.032±0.50 0.219±0.06 0.133±0.04
ENSMUST00000117762 1.897±1.14 N/A 0.382±0.00 0.067±0.01 6.231±1.58 1.090±0.02 0.567±0.15 1.794±0.00 0.769±0.15 3.360±0.00 0.706±0.00 0.970±0.42 0.149±0.06 N/A
ENSMUST00000118405 1.505±0.29 0.433±0.29 0.518±0.23 0.116±0.01 10.611±1.17 1.031±0.10 0.441±0.13 0.956±0.36 2.092±1.12 7.907±0.60 0.071±0.03 0.869±0.43 0.167±0.04 0.235±0.07
ENSMUST00000120857 N/A N/A N/A 0.024±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.105±0.00 0.074±0.01
ENSMUST00000170971 N/A 0.165±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.032±0.00 0.187±0.00 0.297±0.16 N/A
ENSMUSG00000047371 ENSMUST00000060783 13.375±1.76 22.426±1.09 7.380±1.20 13.519±5.24 16.209±6.52 23.724±1.71 12.852±2.05 19.895±5.46 8.250±3.56 15.996±1.55 15.276±0.58 20.315±5.49 7.857±2.36 20.367±4.19

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