C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000VM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000022978-ENSDARG00000025566 CGP 7955 25:3350211-3377426
GeneTranscriptPositionBiotype
ENSDARG00000022978 (tmpob)
thymopoietin b 		ENSDART00000030683 (tmpob-001) 3350211-3358727 protein_coding
ENSDARG00000025566 (slc25a3b)
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3b 		ENSDART00000034704 (slc25a3b-001) 3362750-3377426 protein_coding
ENSDART00000137077 (slc25a3b-003) 3362919-3375102 protein_coding
ENSDART00000142120 (slc25a3b-002) 3362818-3363938 processed_transcript
ENSDART00000146154 (slc25a3b-004) 3374253-3377426 protein_coding
ENSDARG00000083759 (SNORA53)
Small nucleolar RNA SNORA53 		ENSDART00000119159 (SNORA53.1-201) 3372118-3372344 snoRNA

Danio rerio Ensembl (Zv9)

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CIL_0000VM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000120802-ENSG00000075415 CGP 9606 12:98515512-98606379
GeneTranscriptPositionBiotype
ENSG00000075415 (SLC25A3)
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 		ENST00000188376 (SLC25A3-001) 98593625-98601997 protein_coding
ENST00000228318 (SLC25A3-201) 98593625-98601997 protein_coding
ENST00000401722 (SLC25A3-008) 98593591-98606379 protein_coding
ENST00000546766 (SLC25A3-003) 98593655-98601997 retained_intron
ENST00000547444 (SLC25A3-010) 98597565-98598567 retained_intron
ENST00000547534 (SLC25A3-015) 98593686-98598073 protein_coding
ENST00000547869 (SLC25A3-011) 98601065-98602168 retained_intron
ENST00000547908 (SLC25A3-009) 98595664-98598563 retained_intron
ENST00000548046 (SLC25A3-013) 98593656-98598034 protein_coding
ENST00000548480 (SLC25A3-012) 98599858-98601708 retained_intron
ENST00000548847 (SLC25A3-002) 98593725-98601668 protein_coding
ENST00000549338 (SLC25A3-007) 98593696-98601674 protein_coding
ENST00000550695 (SLC25A3-014) 98593686-98598036 protein_coding
ENST00000551123 (SLC25A3-006) 98593696-98601707 nonsense_mediated_decay
ENST00000551265 (SLC25A3-016) 98593686-98594503 protein_coding
ENST00000551917 (SLC25A3-005) 98593650-98601707 protein_coding
ENST00000552981 (SLC25A3-004) 98593660-98601708 protein_coding
ENSG00000120802 (TMPO)
thymopoietin 		ENST00000261210 (TMPO-006) 98515852-98537713 protein_coding
ENST00000266732 (TMPO-001) 98515630-98535634 protein_coding
ENST00000343315 (TMPO-014) 98515618-98548828 protein_coding
ENST00000393053 (TMPO-005) 98515631-98548957 protein_coding
ENST00000546828 (TMPO-013) 98515632-98531779 processed_transcript
ENST00000547214 (TMPO-007) 98527885-98532272 processed_transcript
ENST00000548223 (TMPO-010) 98544202-98547864 processed_transcript
ENST00000548911 (TMPO-012) 98515579-98528013 processed_transcript
ENST00000549938 (TMPO-009) 98516252-98532966 processed_transcript
ENST00000551987 (TMPO-011) 98544639-98547787 retained_intron
ENST00000552831 (TMPO-008) 98527529-98537574 retained_intron
ENST00000556029 (TMPO-002) 98515512-98550379 protein_coding
ENST00000556678 (TMPO-015) 98527886-98547701 protein_coding
ENSG00000225185 (RP11-481K9.4)
 ENST00000557282 (RP11-481K9.4-001) 98590723-98591214 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000VM_0001ENSDARG00000022978ENSDART00000030683ENSDARG00000025566ENSDART00000034704ENSDART00000137077ENSDART00000142120ENSDART00000146154ENSDARG00000083759ENSDART00000119159CIL_0000VM_0002ENSG00000075415ENST00000188376ENST00000228318ENST00000401722ENST00000546766ENST00000547444ENST00000547534ENST00000547869ENST00000547908ENST00000548046ENST00000548480ENST00000548847ENST00000549338ENST00000550695ENST00000551123ENST00000551265ENST00000551917ENST00000552981ENSG00000120802ENST00000261210ENST00000266732ENST00000343315ENST00000393053ENST00000546828ENST00000547214ENST00000548223ENST00000548911ENST00000549938ENST00000551987ENST00000552831ENST00000556029ENST00000556678ENSG00000225185ENST00000557282
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000VM_0001ENSDARG00000022978ENSDART00000030683ENSDARG00000025566ENSDART00000034704ENSDART00000142120ENSDART00000146154ENSDARG00000083759ENSDART00000119159CIL_0000VM_0002ENSG00000075415ENST00000188376ENST00000401722ENST00000546766ENST00000547534ENST00000548046ENST00000548480ENST00000548847ENST00000549338ENST00000551917ENST00000552981ENSG00000120802ENST00000261210ENST00000266732ENST00000548223ENST00000548911ENST00000556029ENSG00000225185ENST00000557282
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000022978 ENSDART00000030683 N/A N/A N/A 5.250±3.05 N/A N/A 2.980±0.14 2.871±0.00 1.703±0.00 N/A 2.679±0.00 N/A N/A N/A
ENSDARG00000025566 ENSDART00000034704 N/A N/A N/A 146.309±56.82 N/A N/A 548.530±198.71 40.387±0.00 148.356±0.00 N/A 477.098±0.00 N/A N/A N/A
ENSDART00000137077 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000142120 N/A N/A N/A N/A N/A N/A 2.502±0.00 1.065±0.27 N/A N/A N/A N/A N/A N/A
ENSDART00000146154 N/A N/A N/A 2.771±0.00 N/A N/A 31.289±0.00 11.636±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000083759 ENSDART00000119159 N/A N/A N/A 0.640±0.00 N/A N/A 4.619±4.33 N/A 0.292±0.00 N/A 0.506±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000075415 ENST00000188376 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 44.426±0.00 N/A N/A
ENST00000228318 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000401722 N/A N/A 1.830±0.00 8.867±1.98 N/A 2.160±0.00 N/A 4.300±2.18 4.771±0.08 1.553±0.00 N/A 3.443±1.81 N/A 3.013±0.00
ENST00000546766 N/A N/A N/A N/A 4.357±0.00 N/A N/A N/A N/A N/A N/A 3.952±0.00 N/A N/A
ENST00000547444 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547534 N/A N/A 44.174±0.00 N/A N/A 42.227±0.00 N/A 40.588±0.00 69.150±0.00 23.259±0.00 N/A 33.494±0.00 N/A N/A
ENST00000547869 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547908 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548046 N/A N/A N/A N/A N/A N/A 188.310±0.00 N/A N/A N/A 149.622±0.00 N/A N/A N/A
ENST00000548480 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 21.336±0.00
ENST00000548847 N/A N/A N/A 22.729±0.00 17.010±0.00 12.944±0.00 N/A 11.637±0.00 N/A N/A N/A N/A N/A N/A
ENST00000549338 34.668±0.00 49.014±0.00 N/A 60.121±0.00 68.068±0.00 N/A N/A 104.035±0.00 N/A 45.607±0.00 N/A 194.166±0.00 149.404±0.00 54.183±0.00
ENST00000550695 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551123 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551917 N/A N/A N/A N/A N/A N/A 204.427±170.37 N/A N/A N/A 102.761±75.82 N/A N/A N/A
ENST00000552981 122.658±0.00 157.935±0.00 25.549±0.00 70.712±16.88 93.759±62.11 142.539±90.57 61.565±27.17 81.636±42.62 88.203±46.59 64.349±42.29 39.745±13.24 154.414±89.78 178.960±107.08 121.560±0.00
ENSG00000120802 ENST00000261210 N/A N/A N/A N/A N/A N/A N/A 7.514±0.00 N/A N/A N/A N/A N/A N/A
ENST00000266732 1.347±0.00 N/A 1.638±0.00 1.589±0.10 1.173±0.00 3.762±1.47 0.859±0.00 3.754±0.00 1.764±0.31 3.015±0.44 0.330±0.18 8.401±3.17 4.317±2.02 7.330±0.21
ENST00000343315 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000393053 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546828 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547214 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548223 N/A N/A N/A N/A N/A N/A N/A N/A 4.798±0.00 N/A N/A N/A N/A N/A
ENST00000548911 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 106.417±0.00
ENST00000549938 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551987 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556029 4.406±0.00 13.318±0.00 N/A 2.448±0.93 5.099±1.52 2.773±1.67 1.297±0.68 4.560±0.00 4.494±0.00 6.313±2.58 1.448±1.37 13.772±2.22 7.164±2.27 8.003±4.00
ENST00000556678 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000225185 ENST00000557282 0.030±0.00 0.065±0.00 N/A 0.171±0.00 0.232±0.00 0.030±0.00 0.114±0.00 N/A N/A 0.031±0.00 N/A 0.104±0.00 0.107±0.00 N/A

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