C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000557282 RP11-481K9.4-001 ENSG00000225185 9606 - 12:98590723-98591214 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLungOvaryPlacentaENST00000557282
Transcript ID Adipose Adrenal Brain Breast Colon Heart Lung Ovary Placenta
ENST00000557282 0.030±0.00 0.065±0.00 0.171±0.00 0.232±0.00 0.030±0.00 0.114±0.00 0.031±0.00 0.104±0.00 0.107±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090D CIL_00090D_0001 VISTA 12:98189717-98793261
CIL_0000VM CIL_0000VM_0002 CGP 12:98515512-98606379

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077747 Gm9234-201 processed_pseudogene Mus_musculus 0 588
ENSMUST00000132846 Ppia-001 protein_coding Mus_musculus 0 575
ENSMUST00000120318 Gm13493-001 processed_pseudogene Mus_musculus 0 573
ENSMUST00000075723 Gm10123-001 processed_pseudogene Mus_musculus 0 564
ENSMUST00000175860 Gm6061-001 processed_pseudogene Mus_musculus 0 560
ENSMUST00000090749 Ppia-005 processed_transcript Mus_musculus 0 551
ENSMUST00000119389 Gm14046-001 processed_pseudogene Mus_musculus 0 545
ENSMUST00000178933 Gm5558-201 processed_pseudogene Mus_musculus 0 544
ENSMUST00000119740 Gm12728-001 translated_processed_pseudogene Mus_musculus 0 542
ENSMUST00000155824 Ppia-003 retained_intron Mus_musculus 0 536
ENSMUST00000075293 E030024N20Rik-001 processed_pseudogene Mus_musculus 0 531
ENSMUST00000099961 Gm6043-201 processed_pseudogene Mus_musculus 0 531
ENSMUST00000081336 Gm6065-201 processed_pseudogene Mus_musculus 0 518
ENSMUST00000177265 Gm5777-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000117621 Gm13750-001 processed_pseudogene Mus_musculus 0 499
ENSMUST00000137829 Ppia-002 retained_intron Mus_musculus 0 492
ENSMUST00000120735 Gm5883-001 processed_pseudogene Mus_musculus 0 488
ENSMUST00000119751 Gm11469-001 processed_pseudogene Mus_musculus 0 464
ENSMUST00000172723 Gm5967-001 processed_pseudogene Mus_musculus 0 459
ENSMUST00000118678 Gm13679-001 processed_pseudogene Mus_musculus 0 448
ENSMUST00000119162 Gm15621-001 processed_pseudogene Mus_musculus 0 420
ENSMUST00000117298 Gm12842-001 processed_pseudogene Mus_musculus 0 370
ENSMUST00000137540 Gclm-003 processed_transcript Mus_musculus 0 267
ENSMUST00000069552 Gm5160-201 protein_coding Mus_musculus 0 261
ENSMUST00000135789 Ppia-004 retained_intron Mus_musculus 0 211
ENSMUST00000185012 Gm12728-003 protein_coding Mus_musculus 0 200
ENSMUST00000184254 Gm12728-002 protein_coding Mus_musculus 0 200
ENSMUST00000121356 Gm6079-001 processed_pseudogene Mus_musculus 2e-37 159
ENSMUST00000188400 RP23-325F17.1-001 processed_pseudogene Mus_musculus 8e-31 137

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