C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CDC-like kinase 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000520878 CLK4-005 ENSG00000113240 9606 - 5:178602664-178627088 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartKidneyLiverLungMusclePlacentaENST00000520878
Transcript ID Bladder Brain Breast Heart Kidney Liver Lung Muscle Placenta
ENST00000520878 2.610±0.00 1.599±0.65 2.432±0.00 1.042±0.00 2.591±0.00 1.004±0.00 5.522±0.00 1.844±0.00 0.125±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000XD CIL_0000XD_0002 CGP 5:178237618-178630615

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000093132 Clk4-001 protein_coding Mus_musculus 0 1757
ENSMUST00000109111 Clk4-004 protein_coding Mus_musculus 0 1587
ENSMUST00000109113 Clk4-003 protein_coding Mus_musculus 0 1587
ENSMUST00000148467 Clk4-014 retained_intron Mus_musculus 0 832
ENSMUST00000034868 Clk1-001 protein_coding Mus_musculus 0 758
ENSMUST00000148330 Clk1-004 nonsense_mediated_decay Mus_musculus 0 621
ENSMUST00000156931 Clk1-002 retained_intron Mus_musculus 0 621
ENSMUST00000186552 Clk1-013 retained_intron Mus_musculus 0 619
ENSMUST00000146776 Clk4-008 retained_intron Mus_musculus 0 492
ENSMUST00000129577 Clk1-003 retained_intron Mus_musculus 0 411
ENSMUST00000140628 Clk4-012 retained_intron Mus_musculus 0 409
ENSMUST00000151338 Clk1-005 nonsense_mediated_decay Mus_musculus 0 403
ENSMUST00000123580 Clk1-006 retained_intron Mus_musculus 0 399
ENSMUST00000148053 Clk4-007 nonsense_mediated_decay Mus_musculus 0 363
ENSMUST00000126131 Clk4-006 nonsense_mediated_decay Mus_musculus 0 361
ENSMUST00000153414 Clk4-002 nonsense_mediated_decay Mus_musculus 0 361
ENSMUST00000136587 Clk4-009 retained_intron Mus_musculus 0 309
ENSMUST00000133200 Clk4-010 retained_intron Mus_musculus 0 309
ENSMUST00000147007 Clk4-011 retained_intron Mus_musculus 0 294
ENSMUST00000130641 Clk4-005 protein_coding Mus_musculus 0 283
ENSMUST00000143468 Clk4-013 retained_intron Mus_musculus 0 213
ENSMUST00000129303 Clk1-009 processed_transcript Mus_musculus 1.96182e-44 185
ENSMUST00000141570 Clk1-010 processed_transcript Mus_musculus 1.00053e-42 180
ENSMUST00000139787 Clk1-011 processed_transcript Mus_musculus 5e-26 124

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