C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0001IV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000026103-ENSG00000138135 CGP 9606 10:88990531-89207314
GeneTranscriptPositionBiotype
ENSG00000107796 (ACTA2)
actin, alpha 2, smooth muscle, aorta
ENST00000224784 (ACTA2-001) 88935074-88952773 protein_coding
ENST00000415557 (ACTA2-002) 88941785-88991339 protein_coding
ENST00000458159 (ACTA2-003) 88941785-88991288 protein_coding
ENST00000458208 (ACTA2-201) 88935076-88991390 protein_coding
ENST00000480297 (ACTA2-006) 88941001-88952747 processed_transcript
ENST00000482085 (ACTA2-004) 88948242-88952773 processed_transcript
ENST00000488967 (ACTA2-005) 88946820-88952773 processed_transcript
ENSG00000138135 (CH25H)
cholesterol 25-hydroxylase
ENST00000371852 (CH25H-001) 89205629-89207314 protein_coding
ENSG00000261438 (RP11-399O19.9)
ENST00000562983 (RP11-399O19.9-001) 89015836-89017059 sense_overlapping
ENSG00000275693 (FAS-AS1)
FAS antisense RNA 1 conserved region
ENST00000620386 (FAS-AS1.1-202) 88992370-88992539 misc_RNA
CIL_0001IV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024778-ENSMUSG00000050370 CGP 10090 19:34290659-34475135
GeneTranscriptPositionBiotype
ENSMUSG00000024778 (Fas)
Fas (TNF receptor superfamily member 6)
ENSMUST00000025691 (Fas-201) 34290659-34327770 protein_coding
ENSMUST00000112472 (Fas-202) 34290659-34309350 protein_coding
ENSMUSG00000050370 (Ch25h)
cholesterol 25-hydroxylase
ENSMUST00000050562 (Ch25h-201) 34473786-34475135 protein_coding
ENSMUSG00000097558 (Gm26902)
predicted gene, 26902
ENSMUST00000181307 (Gm26902-201) 34474833-34481546 lincRNA
ENSMUST00000181777 (Gm26902-202) 34474808-34476618 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001IV_0001ENSG00000107796ENST00000224784ENST00000415557ENST00000458159ENST00000458208ENST00000480297ENST00000482085ENST00000488967ENSG00000138135ENST00000371852ENSG00000261438ENST00000562983ENSG00000275693ENST00000620386CIL_0001IV_0002ENSMUSG00000024778ENSMUST00000025691ENSMUST00000112472ENSMUSG00000050370ENSMUST00000050562ENSMUSG00000097558ENSMUST00000181307ENSMUST00000181777
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001IV_0001ENSG00000107796ENST00000224784ENST00000480297ENSG00000138135ENST00000371852ENSG00000261438ENST00000562983ENSG00000275693ENST00000620386CIL_0001IV_0002ENSMUSG00000024778ENSMUST00000025691ENSMUST00000112472ENSMUSG00000050370ENSMUST00000050562ENSMUSG00000097558ENSMUST00000181307ENSMUST00000181777
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000107796 ENST00000224784 247.266±0.00 1046.020±0.00 14.679±0.00 21.065±13.70 256.316±74.65 443.515±313.59 48.897±26.26 132.740±125.46 306.229±258.71 392.149±335.37 102.044±65.32 502.267±427.23 766.020±366.91 547.593±435.83
ENST00000415557 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000458159 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000458208 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480297 N/A N/A 12.879±0.00 2.085±0.00 N/A N/A N/A N/A N/A N/A 18.514±0.00 25.434±0.00 N/A N/A
ENST00000482085 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488967 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000138135 ENST00000371852 2.125±0.00 3.420±0.00 N/A 1.506±0.17 1.038±0.07 1.251±1.05 0.258±0.18 0.118±0.00 0.177±0.08 9.322±9.06 0.857±0.00 1.083±0.86 0.720±0.49 0.444±0.39
ENSG00000261438 ENST00000562983 0.044±0.00 0.686±0.00 0.181±0.00 0.043±0.00 0.535±0.24 1.092±0.16 0.193±0.01 0.337±0.13 0.196±0.15 1.095±0.17 N/A 0.564±0.34 0.256±0.06 0.383±0.10
ENSG00000275693 ENST00000620386 N/A 0.604±0.00 N/A N/A 0.070±0.00 N/A N/A N/A 4.319±0.00 0.940±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024778 ENSMUST00000025691 3.642±2.40 0.526±0.23 6.166±0.14 0.137±0.04 2.348±1.55 1.171±0.36 2.622±0.47 2.160±0.55 3.472±2.51 7.655±1.29 1.800±0.63 0.885±0.59 3.274±3.62 0.183±0.13
ENSMUST00000112472 N/A N/A N/A N/A N/A N/A N/A 0.955±0.00 N/A N/A N/A N/A N/A 0.139±0.04
ENSMUSG00000050370 ENSMUST00000050562 2.622±1.55 2.477±0.72 2.479±0.05 0.314±0.15 6.833±3.30 4.498±0.53 0.960±0.20 3.678±0.70 0.118±0.07 7.776±4.62 0.152±0.07 6.594±2.49 0.319±0.17 1.576±2.11
ENSMUSG00000097558 ENSMUST00000181307 N/A N/A 0.263±0.06 0.077±0.00 N/A N/A N/A N/A 0.008±0.00 N/A 0.017±0.01 0.149±0.08 0.050±0.03 0.372±0.00
ENSMUST00000181777 N/A N/A N/A N/A 0.070±0.00 N/A 0.151±0.06 N/A 0.034±0.00 N/A 0.065±0.03 N/A 0.065±0.00 0.025±0.00

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