C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, alpha 2, smooth muscle, aorta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000480297 ACTA2-006 ENSG00000107796 9606 - 10:88941001-88952747 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainMuscleOvaryENST00000480297
Transcript ID Bladder Brain Muscle Ovary
ENST00000480297 12.879±0.00 2.085±0.00 18.514±0.00 25.434±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001RY CIL_0001RY_0001 CGP 10:88822132-88975153
CIL_0001IX CIL_0001IX_0001 CGP 10:88879734-88991390
CIL_0001VG CIL_0001VG_0001 CGP 10:88935074-89015785

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000039631 Acta2-201 protein_coding Mus_musculus 0 885
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 652
ENSMUST00000141904 Actg2-005 protein_coding Mus_musculus 0 634
ENSMUST00000121731 Actg2-002 protein_coding Mus_musculus 0 634
ENSMUST00000075161 Actg2-001 protein_coding Mus_musculus 0 634
ENSMUST00000152029 Actg2-004 protein_coding Mus_musculus 0 621
ENSDART00000066430 acta2-201 protein_coding Danio_rerio 0 608
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 544
ENSDART00000109883 ACTC1 (2 of 2)-002 protein_coding Danio_rerio 0 529
ENSDART00000149990 acta2-001 protein_coding Danio_rerio 0 464
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 375
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 375
ENSMUST00000124933 Actg2-006 processed_transcript Mus_musculus 0 250
ENSDART00000155770 ACTC1 (2 of 2)-001 protein_coding Danio_rerio 0 244

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