C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, alpha 2, smooth muscle, aorta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000224784 ACTA2-001 ENSG00000107796 9606 - 10:88935074-88952773 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000224784
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000224784 247.266±0.00 1046.020±0.00 14.679±0.00 21.065±13.70 256.316±74.65 443.515±313.59 48.897±26.26 132.740±125.46 306.229±258.71 392.149±335.37 102.044±65.32 502.267±427.23 766.020±366.91 547.593±435.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001RY CIL_0001RY_0001 CGP 10:88822132-88975153
CIL_0001IX CIL_0001IX_0001 CGP 10:88879734-88991390
CIL_0001VG CIL_0001VG_0001 CGP 10:88935074-89015785

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005615 IDA extracellular space
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006936 TAS muscle contraction
GO:0009615 IEP response to virus
GO:0019901 ISS protein kinase binding
GO:0043234 IDA protein complex
GO:0070062 IDA extracellular vesicular exosome
GO:0072144 IEP glomerular mesangial cell development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000039631 Acta2-201 protein_coding Mus_musculus 0 1674
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 1229
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 1171
ENSDART00000080664 protein_coding Danio_rerio 0 1160
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 1155
ENSMUST00000121731 Actg2-002 protein_coding Mus_musculus 0 1140
ENSMUST00000075161 Actg2-001 protein_coding Mus_musculus 0 1140
ENSMUST00000090269 Actc1-001 protein_coding Mus_musculus 0 1110
ENSDART00000066430 acta2-201 protein_coding Danio_rerio 0 1107
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 1103
ENSDART00000062370 actc1a-001 protein_coding Danio_rerio 0 1050
ENSDART00000114549 hm:zewp0073-201 protein_coding Danio_rerio 0 1033
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 1013
ENSDART00000109883 ACTC1 (2 of 2)-002 protein_coding Danio_rerio 0 994
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 965
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 965
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 965
ENSDART00000149990 acta2-001 protein_coding Danio_rerio 0 963
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 944
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 933
ENSMUST00000141904 Actg2-005 protein_coding Mus_musculus 0 809
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 765
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 760
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 697
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 630
ENSMUST00000152029 Actg2-004 protein_coding Mus_musculus 0 621
ENSMUST00000118518 Gm12003-001 processed_pseudogene Mus_musculus 0 614
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 0 595
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 0 595
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 0 595
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 0 595
ENSMUST00000124933 Actg2-006 processed_transcript Mus_musculus 0 425
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 0 326
ENSDART00000155770 ACTC1 (2 of 2)-001 protein_coding Danio_rerio 0 244

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