C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001J0_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000089031-ENSDARG00000060521 CGP 7955 9:56317019-56366880
GeneTranscriptPositionBiotype
ENSDARG00000060521 (rbm27)
RNA binding motif protein 27 		ENSDART00000085365 (rbm27-201) 56323586-56355746 protein_coding
ENSDART00000148928 (rbm27-001) 56323415-56366880 protein_coding
ENSDARG00000089031 (larsa)
leucyl-tRNA synthetase a 		ENSDART00000126473 (larsa-001) 56317019-56320752 protein_coding
CIL_0001J0_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000133706-ENSG00000275740 CGP 9606 5:146113038-146339251
GeneTranscriptPositionBiotype
ENSG00000091009 (RBM27)
RNA binding motif protein 27 		ENST00000265271 (RBM27-001) 146203600-146289132 protein_coding
ENST00000508019 (RBM27-003) 146261383-146263519 retained_intron
ENSG00000133706 (LARS)
leucyl-tRNA synthetase 		ENST00000274562 (LARS-201) 146113896-146182524 protein_coding
ENST00000394434 (LARS-001) 146113038-146182660 protein_coding
ENST00000503654 (LARS-011) 146168229-146182520 processed_transcript
ENST00000504323 (LARS-005) 146142959-146144731 retained_intron
ENST00000504611 (LARS-014) 146129083-146130557 retained_intron
ENST00000505223 (LARS-012) 146164398-146182650 processed_transcript
ENST00000506231 (LARS-003) 146113911-146132626 retained_intron
ENST00000506436 (LARS-010) 146172691-146182475 retained_intron
ENST00000507095 (LARS-006) 146143487-146151907 processed_transcript
ENST00000508667 (LARS-004) 146143244-146151948 retained_intron
ENST00000508709 (LARS-015) 146123979-146130216 retained_intron
ENST00000510191 (LARS-002) 146113911-146182623 protein_coding
ENST00000511505 (LARS-013) 146157397-146182649 processed_transcript
ENST00000512412 (LARS-008) 146133057-146143538 processed_transcript
ENST00000514104 (LARS-007) 146142782-146144333 retained_intron
ENST00000618084 (LARS-202) 146164315-146182625 protein_coding
ENSG00000238374 (RNU7-180P)
RNA, U7 small nuclear 180 pseudogene 		ENST00000459240 (RNU7-180P-201) 146245191-146245253 snRNA
ENSG00000239317 (RP11-449H3.2)
 ENST00000495857 (RP11-449H3.2-001) 146138771-146139008 processed_pseudogene
ENSG00000239602 (RP11-449H3.1)
 ENST00000477363 (RP11-449H3.1-001) 146137755-146138381 processed_pseudogene
ENSG00000250025 (CTC-359M8.1)
 ENST00000511390 (CTC-359M8.1-002) 146360695-146375425 antisense
ENST00000515598 (CTC-359M8.1-001) 146307098-146376963 antisense
ENSG00000275740 (RP11-449H3.3)
RNA-binding protein 27 {ECO:0000313|Ensembl:ENSP00000475384} 		ENST00000506502 (RP11-449H3.3-001) 146203550-146339251 protein_coding
CIL_0001J0_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024493-ENSMUSG00000024491 CGP 10090 18:42202350-42341542
GeneTranscriptPositionBiotype
ENSMUSG00000024491 (Rbm27)
RNA binding motif protein 27 		ENSMUST00000046972 (Rbm27-201) 42275353-42341542 protein_coding
ENSMUST00000091920 (Rbm27-202) 42275353-42341542 protein_coding
ENSMUSG00000024493 (Lars)
leucyl-tRNA synthetase 		ENSMUST00000097590 (Lars-201) 42202350-42262122 protein_coding
ENSMUSG00000096699 (Rps19-ps4)
ribosomal protein S19, pseudogene 4 		ENSMUST00000091925 (Rps19-ps4-001) 42252398-42252835 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001J0_0001ENSDARG00000060521ENSDART00000085365ENSDART00000148928ENSDARG00000089031ENSDART00000126473CIL_0001J0_0002ENSG00000091009ENST00000265271ENST00000508019ENSG00000133706ENST00000274562ENST00000394434ENST00000503654ENST00000504323ENST00000504611ENST00000505223ENST00000506231ENST00000506436ENST00000507095ENST00000508667ENST00000508709ENST00000510191ENST00000511505ENST00000512412ENST00000514104ENST00000618084ENSG00000238374ENST00000459240ENSG00000239317ENST00000495857ENSG00000239602ENST00000477363ENSG00000250025ENST00000511390ENST00000515598ENSG00000275740ENST00000506502CIL_0001J0_0003ENSMUSG00000024491ENSMUST00000046972ENSMUST00000091920ENSMUSG00000024493ENSMUST00000097590ENSMUSG00000096699ENSMUST00000091925
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001J0_0001ENSDARG00000060521ENSDART00000085365ENSDART00000148928ENSDARG00000089031ENSDART00000126473CIL_0001J0_0002ENSG00000091009ENST00000265271ENSG00000133706ENST00000274562ENST00000394434ENST00000508667ENST00000508709ENST00000510191ENST00000618084ENSG00000238374ENST00000459240ENSG00000239317ENST00000495857ENSG00000239602ENST00000477363ENSG00000250025ENST00000511390ENST00000515598ENSG00000275740ENST00000506502CIL_0001J0_0003ENSMUSG00000024491ENSMUST00000046972ENSMUST00000091920ENSMUSG00000024493ENSMUST00000097590ENSMUSG00000096699ENSMUST00000091925
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000060521 ENSDART00000085365 N/A N/A N/A N/A N/A N/A N/A 0.812±0.35 N/A N/A N/A N/A N/A N/A
ENSDART00000148928 N/A N/A N/A N/A N/A N/A 0.994±0.92 N/A 0.895±0.00 N/A 0.259±0.00 N/A N/A N/A
ENSDARG00000089031 ENSDART00000126473 N/A N/A N/A 1.454±0.84 N/A N/A 0.427±0.21 3.078±0.00 0.521±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000091009 ENST00000265271 1.223±0.00 1.078±0.00 N/A 2.135±0.00 1.859±0.00 1.943±0.76 2.007±0.19 1.785±0.20 2.122±1.47 2.170±0.68 3.910±0.00 2.194±0.28 1.771±0.60 5.271±0.01
ENST00000508019 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000133706 ENST00000274562 7.484±0.00 7.189±0.00 N/A 9.955±0.00 6.627±0.00 10.030±0.00 6.237±0.00 9.379±0.00 4.395±1.20 5.467±0.29 8.281±5.18 10.433±1.39 4.623±0.18 10.526±1.42
ENST00000394434 5.728±0.00 4.060±0.00 1.738±0.00 5.088±0.46 1.559±0.00 3.510±0.00 3.309±1.62 N/A 1.535±0.92 1.918±0.00 17.631±0.00 3.586±2.51 3.291±1.40 6.038±0.00
ENST00000503654 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504611 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505223 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506231 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506436 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507095 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508667 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.596±0.00 10.944±0.00 15.887±0.00
ENST00000508709 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 27.097±0.00 15.404±0.00 33.668±0.00
ENST00000510191 10.524±0.00 6.251±0.00 4.505±0.00 8.346±1.14 9.890±0.25 10.137±2.25 7.640±1.43 5.417±0.90 2.326±1.58 6.149±1.25 9.619±5.71 8.775±3.72 3.721±0.49 10.818±0.00
ENST00000511505 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512412 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514104 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618084 N/A N/A N/A N/A 9.750±0.00 16.485±0.00 N/A 7.873±0.00 11.437±0.00 N/A N/A 7.949±0.00 N/A N/A
ENSG00000238374 ENST00000459240 N/A 1.194±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000239317 ENST00000495857 0.130±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000239602 ENST00000477363 0.041±0.00 N/A N/A 0.127±0.00 0.142±0.06 0.039±0.00 N/A N/A N/A 0.037±0.00 0.036±0.00 0.133±0.02 N/A N/A
ENSG00000250025 ENST00000511390 0.050±0.00 0.205±0.00 N/A 0.058±0.00 0.161±0.00 0.098±0.00 N/A N/A N/A N/A 0.044±0.00 N/A N/A 0.736±0.00
ENST00000515598 N/A 0.081±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.083±0.00
ENSG00000275740 ENST00000506502 N/A N/A N/A 0.781±0.00 2.954±0.00 0.833±0.00 N/A N/A N/A N/A N/A 0.510±0.00 1.406±0.00 4.827±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024491 ENSMUST00000046972 N/A 1.635±0.48 0.435±0.00 0.993±0.10 N/A N/A N/A N/A N/A N/A N/A 2.626±1.00 2.539±1.35 N/A
ENSMUST00000091920 1.173±0.82 N/A 1.529±1.07 1.314±0.30 1.066±0.23 0.994±0.00 N/A 0.731±0.00 0.652±0.13 N/A 0.366±0.00 1.450±0.55 2.080±0.59 4.267±1.46
ENSMUSG00000024493 ENSMUST00000097590 3.234±2.22 2.510±0.65 7.642±3.35 7.905±4.07 2.056±0.96 2.008±1.07 3.964±0.37 2.599±0.93 5.491±4.61 4.005±1.46 9.172±0.52 5.806±5.94 20.016±9.92 3.625±2.76
ENSMUSG00000096699 ENSMUST00000091925 N/A 0.674±0.15 2.406±2.00 0.346±0.07 0.888±0.28 1.044±0.00 0.113±0.00 0.277±0.15 0.308±0.16 0.772±0.14 0.195±0.00 1.082±0.58 0.256±0.12 0.214±0.10

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