C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001QJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000188386-ENSG00000155833 CGP 9606 9:101591615-103018488
GeneTranscriptPositionBiotype
ENSG00000155833 (CYLC2)
cylicin, basic protein of sperm head cytoskeleton 2 		ENST00000374798 (CYLC2-001) 102995311-103018488 protein_coding
ENST00000487798 (CYLC2-002) 102995344-103018488 protein_coding
ENST00000590560 (CYLC2-004) 103012059-103018488 processed_transcript
ENST00000612124 (CYLC2-201) 102995311-103006378 protein_coding
ENSG00000188386 (PPP3R2)
protein phosphatase 3, regulatory subunit B, beta 		ENST00000374806 (PPP3R2-001) 101591615-101595001 protein_coding
ENSG00000198785 (GRIN3A)
glutamate receptor, ionotropic, N-methyl-D-aspartate 3A 		ENST00000361820 (GRIN3A-001) 101569353-101738580 protein_coding
ENST00000479772 (GRIN3A-002) 101600849-101613522 processed_transcript
ENSG00000230302 (MTND3P4)
MT-ND3 pseudogene 4 		ENST00000453537 (MTND3P4-001) 101793454-101793756 processed_pseudogene
ENSG00000235901 (RP11-342F21.1)
 ENST00000454390 (RP11-342F21.1-001) 102515204-102518308 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0001QJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028310-ENSMUSG00000039555 CGP 10090 4:49678747-51230272
GeneTranscriptPositionBiotype
ENSMUSG00000028310 (Ppp3r2)
protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type II) 		ENSMUST00000029991 (Ppp3r2-001) 49678747-49682024 protein_coding
ENSMUSG00000039555 (Cylc2)
cylicin, basic protein of sperm head cytoskeleton 2 		ENSMUST00000041392 (Cylc2-001) 51216678-51230272 protein_coding
ENSMUST00000156384 (Cylc2-002) 51216678-51228821 processed_transcript
ENSMUST00000166749 (Cylc2-201) 51216678-51229928 protein_coding
ENSMUSG00000039579 (Grin3a)
glutamate receptor ionotropic, NMDA3A 		ENSMUST00000076674 (Grin3a-002) 49661611-49845549 protein_coding
ENSMUST00000093859 (Grin3a-001) 49661611-49845549 protein_coding
ENSMUST00000131797 (Grin3a-003) 49769635-49845744 processed_transcript
ENSMUST00000149059 (Grin3a-004) 49704204-49719250 processed_transcript
ENSMUSG00000081120 (Gm12458)
predicted gene 12458 		ENSMUST00000119387 (Gm12458-001) 50050909-50051403 processed_pseudogene
ENSMUSG00000083153 (Gm12459)
predicted gene 12459 		ENSMUST00000120659 (Gm12459-001) 49746731-49747246 processed_pseudogene
ENSMUSG00000084116 (Gm12460)
predicted gene 12460 		ENSMUST00000117147 (Gm12460-001) 51190107-51190463 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001QJ_0001ENSG00000155833ENST00000374798ENST00000487798ENST00000590560ENST00000612124ENSG00000188386ENST00000374806ENSG00000198785ENST00000361820ENST00000479772ENSG00000230302ENST00000453537ENSG00000235901ENST00000454390CIL_0001QJ_0002ENSMUSG00000028310ENSMUST00000029991ENSMUSG00000039555ENSMUST00000041392ENSMUST00000156384ENSMUST00000166749ENSMUSG00000039579ENSMUST00000076674ENSMUST00000093859ENSMUST00000131797ENSMUST00000149059ENSMUSG00000081120ENSMUST00000119387ENSMUSG00000083153ENSMUST00000120659ENSMUSG00000084116ENSMUST00000117147
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001QJ_0001ENSG00000155833ENST00000374798ENST00000487798ENST00000590560ENST00000612124ENSG00000188386ENST00000374806ENSG00000198785ENST00000361820ENST00000479772ENSG00000230302ENST00000453537ENSG00000235901ENST00000454390CIL_0001QJ_0002ENSMUSG00000028310ENSMUST00000029991ENSMUSG00000039555ENSMUST00000041392ENSMUST00000156384ENSMUST00000166749ENSMUSG00000039579ENSMUST00000076674ENSMUST00000093859ENSMUST00000131797ENSMUST00000149059ENSMUSG00000081120ENSMUST00000119387ENSMUSG00000083153ENSMUST00000120659ENSMUSG00000084116ENSMUST00000117147
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000155833 ENST00000374798 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.338±0.00
ENST00000487798 N/A N/A N/A N/A 0.059±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590560 N/A 0.441±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612124 0.005±0.00 N/A N/A 0.005±0.00 0.005±0.00 N/A 0.011±0.01 0.026±0.00 N/A 0.010±0.00 N/A N/A N/A 52.138±0.00
ENSG00000188386 ENST00000374806 N/A N/A N/A N/A 0.017±0.00 N/A N/A 0.056±0.00 N/A N/A N/A 0.008±0.00 0.010±0.00 27.682±7.57
ENSG00000198785 ENST00000361820 0.065±0.00 0.283±0.00 0.035±0.00 1.490±0.02 0.143±0.08 0.094±0.07 0.153±0.10 0.053±0.00 0.083±0.00 0.033±0.02 0.019±0.01 0.091±0.05 0.041±0.02 0.890±0.00
ENST00000479772 N/A N/A N/A N/A N/A N/A N/A N/A 0.172±0.00 N/A N/A N/A N/A N/A
ENSG00000230302 ENST00000453537 N/A N/A N/A N/A 0.268±0.00 N/A N/A 2.711±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000235901 ENST00000454390 N/A N/A N/A N/A N/A N/A 0.016±0.00 N/A N/A N/A N/A N/A N/A 0.040±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028310 ENSMUST00000029991 N/A N/A 0.002±0.00 0.077±0.04 N/A 0.056±0.02 0.010±0.00 0.017±0.01 0.008±0.01 0.036±0.01 N/A 0.007±0.00 0.003±0.00 79.692±26.97
ENSMUSG00000039555 ENSMUST00000041392 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.011±0.00 N/A N/A
ENSMUST00000156384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.808±1.98
ENSMUST00000166749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 246.530±243.73
ENSMUSG00000039579 ENSMUST00000076674 0.135±0.07 0.050±0.03 0.036±0.00 3.240±1.53 0.125±0.06 0.611±0.18 0.078±0.02 0.090±0.02 0.020±0.02 0.063±0.02 0.006±0.00 0.171±0.10 0.034±0.01 0.082±0.03
ENSMUST00000093859 N/A 0.002±0.00 N/A 1.145±0.00 N/A N/A N/A N/A 0.008±0.01 0.123±0.00 0.002±0.00 0.080±0.04 N/A 0.081±0.00
ENSMUST00000131797 N/A 0.048±0.04 N/A 0.743±0.00 0.053±0.01 0.415±0.13 N/A 0.049±0.00 N/A N/A 0.007±0.00 0.126±0.04 0.014±0.00 N/A
ENSMUST00000149059 N/A N/A N/A N/A N/A N/A 0.027±0.00 N/A N/A N/A N/A N/A N/A 0.008±0.00
ENSMUSG00000081120 ENSMUST00000119387 N/A N/A N/A 0.049±0.00 N/A N/A N/A N/A 0.130±0.00 N/A 0.086±0.00 0.217±0.01 0.462±0.00 N/A
ENSMUSG00000083153 ENSMUST00000120659 N/A N/A N/A 0.204±0.14 N/A 0.343±0.00 N/A N/A N/A N/A N/A N/A N/A 0.193±0.00
ENSMUSG00000084116 ENSMUST00000117147 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.135±0.00 0.161±0.00 N/A

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