C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) subunit, alpha type, 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000216455 PSMA3-001 ENSG00000100567 9606 + 14:58244831-58272007 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216455
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216455 7.352±0.00 6.591±0.52 23.136±4.99 13.329±3.36 21.784±12.93 19.009±0.00 26.791±15.07 12.382±3.89 24.794±7.32 39.296±12.03 47.740±13.83 17.308±7.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00022F CIL_00022F_0001 CGP 14:57563922-58298139
CIL_0001K7 CIL_0001K7_0001 CGP 14:58200080-58272012
CIL_0004LX CIL_0004LX_0001 CGP 14:58244831-58373887

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000082 TAS G1/S transition of mitotic cell cycle
GO:0000209 TAS protein polyubiquitination
GO:0000278 TAS mitotic cell cycle
GO:0000502 IDA proteasome complex
GO:0002474 TAS antigen processing and presentation of peptide antigen via MHC class I
GO:0002479 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent
GO:0004175 IEA endopeptidase activity
GO:0004298 IEA threonine-type endopeptidase activity
GO:0005515 IPI protein binding
GO:0005634 TAS nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 TAS cytoplasm
GO:0005829 TAS cytosol
GO:0005839 IDA:IEA proteasome core complex
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0006521 TAS regulation of cellular amino acid metabolic process
GO:0006915 TAS apoptotic process
GO:0006977 TAS DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019773 IEA proteasome core complex, alpha-subunit complex
GO:0031145 TAS anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0034641 TAS cellular nitrogen compound metabolic process
GO:0042590 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I
GO:0042981 TAS regulation of apoptotic process
GO:0043066 TAS negative regulation of apoptotic process
GO:0044281 TAS small molecule metabolic process
GO:0051436 TAS negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051437 TAS positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051439 TAS regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051603 IEA proteolysis involved in cellular protein catabolic process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000160027 Psma3-001 protein_coding Mus_musculus 0 1092
ENSMUST00000071704 Psma3-005 nonsense_mediated_decay Mus_musculus 0 1057
ENSMUST00000162626 Psma3-002 nonsense_mediated_decay Mus_musculus 0 985
ENSMUST00000120054 Gm5406-001 processed_pseudogene Mus_musculus 0 952
ENSMUST00000160864 Psma3-007 protein_coding Mus_musculus 0 933
ENSMUST00000118459 Gm13835-001 processed_pseudogene Mus_musculus 0 929
ENSMUST00000160683 Psma3-004 retained_intron Mus_musculus 0 625
ENSMUST00000163035 Psma3-006 retained_intron Mus_musculus 0 466
ENSDART00000130105 psma3-001 protein_coding Danio_rerio 0 466
ENSMUST00000162851 Psma3-008 nonsense_mediated_decay Mus_musculus 0 420
ENSMUST00000162898 Psma3-009 protein_coding Mus_musculus 0.000000000004 77

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