C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00023Q_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000055577-ENSDARG00000045798 CGP 7955 4:1011358-1280268
GeneTranscriptPositionBiotype
ENSDARG00000045798 (ptn)
pleiotrophin 		ENSDART00000077965 (ptn-001) 1221209-1280268 protein_coding
ENSDARG00000055577 (chrm2a)
cholinergic receptor, muscarinic 2a 		ENSDART00000077955 (chrm2a-001) 1011358-1204445 protein_coding
ENSDARG00000097732 (si:ch211-117i20.2)
si:ch211-117i20.2 		ENSDART00000157357 (si:ch211-117i20.2-001) 968170-1012667 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_00023Q_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000181072-ENSG00000105894 CGP 9606 7:136868669-137343865
GeneTranscriptPositionBiotype
ENSG00000105894 (PTN)
pleiotrophin 		ENST00000348225 (PTN-001) 137227341-137343865 protein_coding
ENST00000393083 (PTN-002) 137227364-137343774 protein_coding
ENSG00000181072 (CHRM2)
cholinergic receptor, muscarinic 2 		ENST00000320658 (CHRM2-007) 136869085-137016266 protein_coding
ENST00000401861 (CHRM2-003) 136869122-137017024 protein_coding
ENST00000445907 (CHRM2-001) 136868669-137020255 protein_coding
ENST00000453373 (CHRM2-004) 136869085-137016642 protein_coding
ENST00000471195 (CHRM2-005) 136868778-136869884 processed_transcript
ENST00000480591 (CHRM2-002) 136869085-136871963 processed_transcript
ENST00000481598 (CHRM2-006) 136869085-136870171 processed_transcript
ENSG00000207597 (MIR490)
microRNA 490 		ENST00000384865 (MIR490-201) 136903167-136903294 miRNA
ENSG00000223657 (KRT8P51)
keratin 8 pseudogene 51 		ENST00000438938 (KRT8P51-001) 136938280-136938553 processed_pseudogene
ENSG00000224469 (AC009517.2)
 ENST00000454750 (AC009517.2-001) 137164043-137164612 processed_pseudogene
ENSG00000231114 (AC078842.4)
 ENST00000447529 (AC078842.4-001) 137318592-137326953 lincRNA
ENST00000448365 (AC078842.4-002) 137324743-137325817 lincRNA
ENSG00000234352 (MIR490)
microRNA 490 		ENST00000425981 (MIR490-002) 136898773-137164341 antisense
ENST00000439694 (MIR490-001) 136784075-137181771 antisense
ENST00000586239 (MIR490-003) 136685559-137164273 antisense
ENST00000592183 (MIR490-004) 136785832-137182107 antisense
ENST00000593789 (MIR490-006) 136743765-137164275 antisense
ENST00000597642 (MIR490-005) 136743763-137164275 antisense
ENST00000598184 (MIR490-007) 136752267-137164275 antisense
ENST00000599888 (MIR490-008) 137119757-137164270 antisense
ENST00000608269 (MIR490-009) 136901906-136914302 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_00023Q_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000045613-ENSMUSG00000029838 CGP 10090 6:36388084-36811361
GeneTranscriptPositionBiotype
ENSMUSG00000029838 (Ptn)
pleiotrophin 		ENSMUST00000101534 (Ptn-201) 36715663-36811361 protein_coding
ENSMUSG00000045613 (Chrm2)
cholinergic receptor, muscarinic 2, cardiac 		ENSMUST00000169004 (Chrm2-002) 36388195-36444497 processed_transcript
ENSMUST00000172278 (Chrm2-001) 36388084-36528414 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00023Q_0001ENSDARG00000045798ENSDART00000077965ENSDARG00000055577ENSDART00000077955ENSDARG00000097732ENSDART00000157357CIL_00023Q_0002ENSG00000105894ENST00000348225ENST00000393083ENSG00000181072ENST00000320658ENST00000401861ENST00000445907ENST00000453373ENST00000471195ENST00000480591ENST00000481598ENSG00000207597ENST00000384865ENSG00000223657ENST00000438938ENSG00000224469ENST00000454750ENSG00000231114ENST00000447529ENST00000448365ENSG00000234352ENST00000425981ENST00000439694ENST00000586239ENST00000592183ENST00000593789ENST00000597642ENST00000598184ENST00000599888ENST00000608269CIL_00023Q_0003ENSMUSG00000029838ENSMUST00000101534ENSMUSG00000045613ENSMUST00000169004ENSMUST00000172278
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00023Q_0001ENSDARG00000045798ENSDART00000077965ENSDARG00000055577ENSDART00000077955ENSDARG00000097732ENSDART00000157357CIL_00023Q_0002ENSG00000105894ENST00000348225ENST00000393083ENSG00000181072ENST00000320658ENST00000445907ENST00000453373ENST00000471195ENSG00000207597ENST00000384865ENSG00000223657ENST00000438938ENSG00000224469ENST00000454750ENSG00000231114ENST00000447529ENST00000448365ENSG00000234352ENST00000425981ENST00000439694ENST00000586239ENST00000592183ENST00000597642ENST00000598184ENST00000599888ENST00000608269CIL_00023Q_0003ENSMUSG00000029838ENSMUST00000101534ENSMUSG00000045613ENSMUST00000169004ENSMUST00000172278
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000045798 ENSDART00000077965 N/A N/A N/A 14.214±7.38 N/A N/A 0.511±0.18 0.295±0.08 0.137±0.00 N/A 2.144±0.00 N/A N/A N/A
ENSDARG00000055577 ENSDART00000077955 N/A N/A N/A 4.387±3.09 N/A N/A 5.654±4.47 0.730±0.00 0.833±0.00 N/A 0.119±0.00 N/A N/A N/A
ENSDARG00000097732 ENSDART00000157357 N/A N/A N/A 0.289±0.17 N/A N/A 0.086±0.00 0.715±0.00 0.124±0.00 N/A 0.199±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000105894 ENST00000348225 0.208±0.00 3.807±0.00 2.143±0.00 30.256±8.06 3.744±2.12 9.867±7.81 8.069±5.04 4.271±3.45 2.633±2.13 8.856±5.85 0.508±0.00 4.898±2.92 16.377±6.96 33.558±8.08
ENST00000393083 N/A N/A N/A N/A N/A N/A 0.467±0.00 N/A N/A N/A 0.195±0.00 N/A N/A N/A
ENSG00000181072 ENST00000320658 0.007±0.00 N/A N/A N/A N/A N/A N/A 0.069±0.00 N/A N/A N/A N/A N/A 0.086±0.00
ENST00000401861 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000445907 0.002±0.00 N/A N/A 0.272±0.00 N/A 2.970±1.61 1.583±0.44 0.021±0.00 4.418±0.00 0.155±0.00 N/A 0.041±0.02 0.041±0.00 N/A
ENST00000453373 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.187±0.00 N/A N/A N/A N/A
ENST00000471195 N/A N/A N/A 2.045±0.00 N/A N/A N/A N/A N/A 2.085±0.00 N/A N/A N/A N/A
ENST00000480591 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481598 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000207597 ENST00000384865 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.601±0.00 N/A N/A N/A N/A
ENSG00000223657 ENST00000438938 N/A N/A N/A 0.183±0.00 N/A N/A 0.075±0.00 0.088±0.00 N/A N/A N/A 0.269±0.00 0.506±0.00 N/A
ENSG00000224469 ENST00000454750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.037±0.00 N/A N/A 1.112±0.00
ENSG00000231114 ENST00000447529 N/A N/A N/A 0.045±0.01 0.122±0.00 N/A 0.020±0.00 N/A 0.109±0.00 0.073±0.00 N/A N/A N/A 0.044±0.00
ENST00000448365 N/A N/A 0.106±0.00 N/A N/A N/A 0.177±0.00 N/A N/A N/A N/A N/A N/A 0.745±0.34
ENSG00000234352 ENST00000425981 N/A N/A N/A N/A N/A 0.329±0.00 0.137±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000439694 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.034±0.00 0.171±0.00
ENST00000586239 N/A N/A N/A N/A N/A N/A N/A 0.306±0.00 N/A N/A N/A 0.016±0.00 N/A N/A
ENST00000592183 N/A N/A N/A 0.115±0.00 0.130±0.00 N/A N/A N/A N/A N/A N/A 0.161±0.00 N/A N/A
ENST00000593789 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000597642 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.734±0.12
ENST00000598184 0.326±0.00 0.431±0.00 N/A 0.124±0.00 N/A 0.111±0.00 N/A N/A 0.080±0.00 N/A N/A 0.071±0.07 0.093±0.00 N/A
ENST00000599888 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.064±0.00 N/A
ENST00000608269 N/A 0.021±0.00 N/A 0.033±0.01 0.062±0.00 0.014±0.00 0.117±0.00 0.087±0.01 0.032±0.00 N/A N/A N/A 0.011±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029838 ENSMUST00000101534 7.608±7.07 8.245±0.71 N/A 53.315±6.02 10.158±3.60 5.958±1.09 0.855±0.13 0.968±0.17 0.558±0.50 0.532±0.18 0.227±0.06 6.150±0.98 N/A 0.452±0.08
ENSMUSG00000045613 ENSMUST00000169004 0.055±0.00 N/A N/A N/A 0.139±0.00 N/A N/A 0.052±0.00 N/A N/A N/A 0.232±0.00 N/A 0.064±0.00
ENSMUST00000172278 0.013±0.01 0.050±0.02 2.211±0.31 1.165±0.46 0.097±0.05 2.972±0.97 16.362±2.58 0.034±0.02 0.099±0.08 4.140±0.47 0.010±0.00 0.040±0.02 0.060±0.05 0.037±0.03

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