C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00025I_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000128039-ENSG00000134851 CGP 9606 4:55346109-55453397
GeneTranscriptPositionBiotype
ENSG00000128039 (SRD5A3)
steroid 5 alpha-reductase 3 		ENST00000264228 (SRD5A3-001) 55346109-55373096 protein_coding
ENST00000505210 (SRD5A3-002) 55346412-55370310 protein_coding
ENST00000514398 (SRD5A3-003) 55359000-55369975 processed_transcript
ENSG00000134851 (TMEM165)
transmembrane protein 165 		ENST00000381334 (TMEM165-001) 55395957-55426172 protein_coding
ENST00000502797 (TMEM165-008) 55403243-55412156 retained_intron
ENST00000506103 (TMEM165-012) 55417919-55452458 nonsense_mediated_decay
ENST00000506198 (TMEM165-006) 55395957-55425657 protein_coding
ENST00000508404 (TMEM165-002) 55395963-55425804 nonsense_mediated_decay
ENST00000508561 (TMEM165-009) 55416923-55425537 processed_transcript
ENST00000509575 (TMEM165-010) 55417691-55424812 retained_intron
ENST00000511710 (TMEM165-007) 55398923-55417245 processed_transcript
ENST00000514070 (TMEM165-005) 55396251-55397405 processed_transcript
ENST00000514904 (TMEM165-003) 55415271-55425545 processed_transcript
ENST00000515591 (TMEM165-004) 55423114-55425631 retained_intron
ENST00000608091 (TMEM165-013) 55417129-55453397 protein_coding
ENSG00000134852 (CLOCK)
clock circadian regulator 		ENST00000309964 (CLOCK-005) 55427903-55510027 protein_coding
ENST00000381322 (CLOCK-002) 55434823-55545932 protein_coding
ENST00000435527 (CLOCK-010) 55463698-55546546 protein_coding
ENST00000479384 (CLOCK-004) 55442278-55443755 retained_intron
ENST00000506747 (CLOCK-007) 55453760-55510066 retained_intron
ENST00000506923 (CLOCK-011) 55478847-55546881 processed_transcript
ENST00000508049 (CLOCK-012) 55470744-55479060 retained_intron
ENST00000509151 (CLOCK-009) 55482773-55546655 processed_transcript
ENST00000511124 (CLOCK-006) 55432476-55449426 retained_intron
ENST00000513033 (CLOCK-008) 55486394-55546646 processed_transcript
ENST00000513440 (CLOCK-001) 55435022-55547138 protein_coding
ENSG00000239040 (Y_RNA)
Y RNA 		ENST00000459077 (Y_RNA.1-853) 55412636-55412738 misc_RNA
ENSG00000249700 (SRD5A3-AS1)
SRD5A3 antisense RNA 1 		ENST00000433175 (SRD5A3-AS1-001) 55363971-55383396 antisense
ENST00000510637 (SRD5A3-AS1-002) 55366601-55385580 antisense
ENST00000591915 (SRD5A3-AS1-003) 55377607-55387443 antisense
ENST00000592823 (SRD5A3-AS1-004) 55374875-55395842 antisense
ENST00000595103 (SRD5A3-AS1-009) 55366954-55385625 antisense
ENST00000595734 (SRD5A3-AS1-008) 55366954-55385666 antisense
ENST00000596289 (SRD5A3-AS1-010) 55366954-55385300 antisense
ENST00000596312 (SRD5A3-AS1-012) 55366954-55381893 antisense
ENST00000598819 (SRD5A3-AS1-007) 55387321-55395830 antisense
ENST00000598906 (SRD5A3-AS1-011) 55366954-55383882 antisense
ENST00000599135 (SRD5A3-AS1-005) 55377607-55395842 antisense
ENST00000601433 (SRD5A3-AS1-006) 55382538-55395837 antisense
ENST00000608086 (SRD5A3-AS1-016) 55367010-55375972 antisense
ENST00000608136 (SRD5A3-AS1-013) 55386778-55395847 retained_intron
ENST00000608265 (SRD5A3-AS1-017) 55367010-55385608 antisense
ENST00000608558 (SRD5A3-AS1-018) 55367010-55383805 antisense
ENST00000609051 (SRD5A3-AS1-019) 55367010-55385608 antisense
ENST00000609487 (SRD5A3-AS1-022) 55367010-55385615 antisense
ENST00000609500 (SRD5A3-AS1-015) 55367010-55380892 antisense
ENST00000609573 (SRD5A3-AS1-020) 55367017-55385585 antisense
ENST00000609580 (SRD5A3-AS1-014) 55367010-55386406 antisense
ENST00000609700 (SRD5A3-AS1-021) 55367012-55383450 antisense
ENST00000610396 (SRD5A3-AS1-024) 55366954-55386687 retained_intron
ENST00000613794 (SRD5A3-AS1-026) 55367010-55382663 antisense
ENST00000619203 (SRD5A3-AS1-025) 55374924-55386892 retained_intron
ENST00000619685 (SRD5A3-AS1-027) 55367010-55375188 retained_intron
ENST00000619912 (SRD5A3-AS1-023) 55366954-55382642 antisense
ENSG00000251111 (FCF1P8)
FCF1 pseudogene 8 		ENST00000510322 (FCF1P8-001) 55351812-55352408 processed_pseudogene
ENSG00000273257 (RP11-177J6.1)
 ENST00000609511 (RP11-177J6.1-001) 55387949-55388271 lincRNA
CIL_00025I_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029233-ENSMUSG00000029234 CGP 10090 5:76140271-76209245
GeneTranscriptPositionBiotype
ENSMUSG00000029233 (Srd5a3)
steroid 5 alpha-reductase 3 		ENSMUST00000031143 (Srd5a3-001) 76140271-76155479 protein_coding
ENSMUST00000113506 (Srd5a3-005) 76147961-76155246 protein_coding
ENSMUST00000113507 (Srd5a3-004) 76146637-76155244 protein_coding
ENSMUST00000124217 (Srd5a3-007) 76152769-76155504 retained_intron
ENSMUST00000127278 (Srd5a3-008) 76140730-76149947 protein_coding
ENSMUST00000138699 (Srd5a3-006) 76140271-76151515 retained_intron
ENSMUST00000149222 (Srd5a3-002) 76140306-76140862 processed_transcript
ENSMUST00000152642 (Srd5a3-003) 76140700-76149755 protein_coding
ENSMUSG00000029234 (Tmem165)
transmembrane protein 165 		ENSMUST00000031144 (Tmem165-001) 76183880-76209245 protein_coding
ENSMUST00000130842 (Tmem165-004) 76199117-76204655 protein_coding
ENSMUST00000136424 (Tmem165-003) 76183950-76196987 processed_transcript
ENSMUST00000138544 (Tmem165-005) 76199445-76205155 retained_intron
ENSMUST00000153633 (Tmem165-006) 76204120-76206033 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00025I_0001ENSG00000128039ENST00000264228ENST00000505210ENSG00000134851ENST00000381334ENST00000508404ENST00000508561ENSG00000134852ENST00000309964ENST00000381322ENST00000513440ENSG00000239040ENST00000459077ENSG00000249700ENST00000433175ENST00000510637ENST00000591915ENST00000608136ENST00000619685ENST00000619912ENSG00000251111ENST00000510322ENSG00000273257ENST00000609511CIL_00025I_0002ENSMUSG00000029233ENSMUST00000031143ENSMUST00000113506ENSMUST00000113507ENSMUST00000124217ENSMUST00000138699ENSMUST00000149222ENSMUSG00000029234ENSMUST00000031144ENSMUST00000130842ENSMUST00000136424ENSMUST00000138544ENSMUST00000153633
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000128039 ENST00000264228 2.315±0.00 0.781±0.00 0.310±0.00 1.520±0.24 1.375±0.00 0.385±0.24 0.526±0.39 0.621±0.46 0.435±0.21 0.524±0.00 0.857±0.00 0.996±0.29 1.585±0.15 1.849±0.00
ENST00000505210 13.847±0.00 5.416±0.00 0.963±0.00 4.555±0.12 3.945±2.87 5.640±0.00 1.923±1.35 3.493±1.99 2.797±2.09 5.445±0.00 2.898±2.10 3.098±0.85 7.449±1.40 8.366±0.00
ENST00000514398 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000134851 ENST00000381334 19.338±0.00 23.478±0.00 N/A 18.211±0.00 15.831±2.29 11.143±1.95 9.159±5.28 34.765±0.00 6.063±0.00 16.923±9.25 2.989±0.00 17.003±5.84 25.831±12.12 16.872±0.00
ENST00000502797 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506103 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506198 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508404 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 23.496±0.00 33.199±0.00 N/A
ENST00000508561 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.380±0.00 18.998±0.00 N/A
ENST00000509575 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511710 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514070 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515591 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000608091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000134852 ENST00000309964 3.949±0.00 3.253±0.00 N/A 5.580±1.63 1.770±0.26 1.238±0.02 2.631±1.71 3.590±0.00 1.876±1.35 2.346±0.74 0.587±0.00 3.866±1.08 1.286±0.16 8.918±2.49
ENST00000381322 N/A N/A 1.840±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000435527 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506747 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506923 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508049 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509151 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511124 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513033 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513440 N/A N/A N/A N/A N/A 2.409±0.00 1.612±0.00 N/A N/A N/A 1.354±0.00 N/A N/A N/A
ENSG00000239040 ENST00000459077 0.576±0.00 3.710±0.00 N/A N/A 0.189±0.00 N/A 0.679±0.00 N/A 86.295±0.00 1.185±0.00 N/A N/A N/A N/A
ENSG00000249700 ENST00000433175 N/A 1.564±0.00 N/A N/A 1.635±0.00 N/A N/A N/A N/A 0.861±0.00 N/A 0.618±0.00 N/A 2.175±0.00
ENST00000510637 N/A N/A N/A N/A N/A N/A N/A N/A 0.169±0.00 N/A N/A N/A N/A N/A
ENST00000591915 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.563±0.00 N/A N/A N/A
ENST00000592823 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000595103 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000595734 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000596289 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000596312 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000598819 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000598906 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000599135 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000601433 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000608086 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000608136 N/A N/A N/A 2.973±0.00 N/A 0.541±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000608265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000608558 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609487 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609500 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609573 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609580 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609700 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000610396 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613794 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619203 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619685 N/A N/A N/A N/A N/A N/A N/A 0.736±0.00 N/A 1.481±0.00 N/A N/A N/A N/A
ENST00000619912 N/A N/A 0.374±0.00 N/A N/A N/A 0.264±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000251111 ENST00000510322 0.036±0.00 N/A N/A 0.090±0.00 0.035±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000273257 ENST00000609511 0.577±0.00 0.426±0.00 N/A 1.150±0.07 0.170±0.00 0.124±0.05 0.233±0.00 0.084±0.00 N/A 0.682±0.56 N/A 0.326±0.04 0.325±0.26 0.362±0.05
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029233 ENSMUST00000031143 22.910±5.45 23.500±4.07 9.956±0.27 2.591±1.51 18.749±3.21 16.562±2.15 4.619±0.78 10.807±3.02 6.750±1.48 23.117±2.12 0.819±0.30 21.730±11.34 11.288±10.08 1.900±0.51
ENSMUST00000113506 N/A N/A N/A N/A 25.920±0.00 N/A N/A N/A 2.234±0.00 N/A 0.689±0.00 8.680±0.56 9.590±2.46 N/A
ENSMUST00000113507 9.151±1.92 N/A 3.939±0.00 1.251±0.29 6.609±0.00 N/A 3.887±0.87 6.876±1.85 3.245±0.90 N/A 0.898±0.28 3.122±0.86 6.594±0.00 1.164±0.83
ENSMUST00000124217 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.207±0.00 2.153±0.00 0.663±0.00 N/A
ENSMUST00000127278 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138699 N/A N/A N/A 0.233±0.00 N/A N/A N/A N/A N/A N/A 0.175±0.00 0.449±0.00 N/A 0.035±0.00
ENSMUST00000149222 69.618±4.93 232.779±70.73 N/A N/A 66.323±18.59 47.677±6.46 N/A 21.409±0.63 12.610±1.96 51.696±10.66 N/A 68.417±24.87 N/A N/A
ENSMUST00000152642 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000029234 ENSMUST00000031144 31.996±11.03 11.080±1.57 28.878±4.71 15.400±9.40 15.329±1.58 38.126±11.02 8.353±0.54 15.889±2.74 12.861±8.50 31.086±4.62 4.748±0.84 28.748±16.99 59.829±29.75 10.019±4.33
ENSMUST00000130842 N/A N/A N/A 3.294±0.00 14.117±0.00 N/A 7.476±0.65 12.282±0.00 4.679±0.00 N/A N/A N/A N/A N/A
ENSMUST00000136424 N/A 68.602±26.82 N/A N/A N/A 31.032±10.15 N/A N/A N/A N/A N/A 34.879±7.56 N/A N/A
ENSMUST00000138544 N/A N/A N/A 2.035±0.00 N/A N/A N/A N/A N/A N/A 2.054±0.00 8.963±2.70 15.317±0.00 1.351±0.00
ENSMUST00000153633 N/A N/A N/A 11.572±0.00 N/A N/A N/A N/A N/A N/A N/A 36.312±0.00 81.517±8.63 9.852±0.00

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