C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00027C_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000158623-ENSG00000213265 CGP 9606 7:130506238-130687432
GeneTranscriptPositionBiotype
ENSG00000106484 (MEST)
mesoderm specific transcript 		ENST00000223215 (MEST-001) 130492093-130506292 protein_coding
ENST00000341441 (MEST-002) 130486171-130506292 protein_coding
ENST00000378576 (MEST-004) 130486354-130506292 protein_coding
ENST00000393187 (MEST-201) 130491329-130506296 protein_coding
ENST00000399874 (MEST-007) 130486971-130498179 protein_coding
ENST00000416162 (MEST-003) 130486354-130506292 protein_coding
ENST00000421001 (MEST-009) 130491333-130500807 protein_coding
ENST00000427521 (MEST-006) 130486336-130502720 protein_coding
ENST00000433159 (MEST-008) 130487126-130498451 protein_coding
ENST00000437637 (MEST-011) 130492472-130498206 protein_coding
ENST00000437945 (MEST-005) 130492100-130505353 protein_coding
ENST00000458161 (MEST-012) 130494530-130498477 protein_coding
ENST00000460590 (MEST-010) 130492395-130495547 processed_transcript
ENST00000462132 (MEST-013) 130497166-130502736 processed_transcript
ENST00000463263 (MEST-017) 130498226-130505298 protein_coding
ENST00000475188 (MEST-014) 130497677-130498801 retained_intron
ENST00000488093 (MEST-016) 130498380-130501069 retained_intron
ENST00000494868 (MEST-015) 130498225-130500042 retained_intron
ENSG00000226045 (AC009274.6)
 ENST00000406065 (AC009274.6-001) 130645225-130645594 processed_pseudogene
ENSG00000239021 (RNA5SP246)
RNA, 5S ribosomal pseudogene 246 		ENST00000458909 (RNA5SP246-201) 130602795-130602913 rRNA

Homo sapiens Ensembl (GRCh38)

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CIL_00027C_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025607-ENSMUSG00000039032 CGP 10090 6:30747554-30915573
GeneTranscriptPositionBiotype
ENSMUSG00000025607 (Copg2)
coatomer protein complex, subunit gamma 2 		ENSMUST00000048774 (Copg2-201) 30747554-30896739 protein_coding
ENSMUST00000122833 (Copg2-006) 30858427-30896730 retained_intron
ENSMUST00000131256 (Copg2-002) 30858509-30896710 processed_transcript
ENSMUST00000133916 (Copg2-004) 30858803-30896426 protein_coding
ENSMUST00000134137 (Copg2-003) 30896115-30896748 processed_transcript
ENSMUST00000135230 (Copg2-001) 30858738-30896794 protein_coding
ENSMUST00000151973 (Copg2-005) 30894897-30896437 processed_transcript
ENSMUST00000166192 (Copg2-202) 30824238-30896739 protein_coding
ENSMUSG00000039032 (Tsga13)
testis specific gene A13 		ENSMUST00000048580 (Tsga13-201) 30896981-30915573 protein_coding
ENSMUSG00000085321 (4930412F09Rik)
RIKEN cDNA 4930412F09 gene 		ENSMUST00000139006 (4930412F09Rik-001) 30896899-30943470 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00027C_0001ENSG00000106484ENST00000223215ENST00000341441ENST00000378576ENST00000393187ENST00000399874ENST00000416162ENST00000421001ENST00000427521ENST00000433159ENST00000437637ENST00000437945ENST00000458161ENST00000460590ENST00000462132ENST00000463263ENST00000475188ENST00000488093ENST00000494868ENSG00000226045ENST00000406065ENSG00000239021ENST00000458909CIL_00027C_0002ENSMUSG00000025607ENSMUST00000048774ENSMUST00000122833ENSMUST00000131256ENSMUST00000133916ENSMUST00000134137ENSMUST00000135230ENSMUST00000151973ENSMUST00000166192ENSMUSG00000039032ENSMUST00000048580ENSMUSG00000085321ENSMUST00000139006
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00027C_0001ENSG00000106484ENST00000223215ENST00000341441ENST00000416162ENST00000437945ENST00000494868ENSG00000226045ENST00000406065ENSG00000239021ENST00000458909CIL_00027C_0002ENSMUSG00000025607ENSMUST00000048774ENSMUSG00000039032ENSMUST00000048580ENSMUSG00000085321ENSMUST00000139006
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000106484 ENST00000223215 11.140±0.00 17.507±0.00 N/A N/A 25.960±20.76 5.096±1.28 2.225±0.00 5.235±2.02 2.925±0.55 7.527±5.16 N/A 13.039±0.43 213.243±122.37 7.482±0.00
ENST00000341441 N/A N/A N/A N/A N/A N/A N/A N/A 1.988±0.00 N/A N/A 6.744±1.88 N/A N/A
ENST00000378576 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000393187 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000399874 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000416162 N/A N/A N/A N/A N/A N/A 0.918±0.00 2.475±0.00 N/A N/A N/A 3.822±0.00 N/A N/A
ENST00000421001 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427521 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433159 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000437637 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000437945 N/A N/A 2.890±0.00 N/A N/A N/A N/A 2.592±0.00 N/A N/A 0.584±0.00 N/A N/A N/A
ENST00000458161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460590 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462132 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463263 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488093 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.511±0.00 N/A N/A N/A
ENSG00000226045 ENST00000406065 N/A 0.112±0.00 N/A 0.248±0.00 N/A 1.011±0.00 0.322±0.00 N/A 0.052±0.00 N/A 0.050±0.00 0.415±0.26 N/A 0.135±0.08
ENSG00000239021 ENST00000458909 N/A N/A N/A 0.393±0.00 0.193±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025607 ENSMUST00000048774 18.204±6.62 11.327±1.29 18.112±2.46 25.899±11.76 8.393±2.23 6.411±0.70 6.163±1.34 7.686±1.35 11.028±5.98 7.836±1.84 3.444±0.51 9.444±2.31 11.698±5.84 4.674±1.38
ENSMUST00000122833 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131256 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133916 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134137 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135230 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151973 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166192 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000039032 ENSMUST00000048580 N/A N/A 0.049±0.02 0.123±0.01 N/A N/A N/A N/A 0.035±0.02 N/A 0.039±0.00 0.124±0.07 0.046±0.04 9.155±1.03
ENSMUSG00000085321 ENSMUST00000139006 N/A N/A N/A 0.025±0.00 N/A N/A N/A N/A 0.013±0.00 N/A N/A N/A 0.052±0.00 N/A

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