C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002BE_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000030614-ENSDARG00000045486 CGP 7955 4:20141972-20402515
GeneTranscriptPositionBiotype
ENSDARG00000030614 (syt1a)
synaptotagmin Ia 		ENSDART00000041861 (syt1a-001) 20141973-20248531 protein_coding
ENSDART00000066896 (syt1a-201) 20141972-20251089 protein_coding
CIL_0002BE_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000067715-ENSG00000177425 CGP 9606 12:78863993-79691097
GeneTranscriptPositionBiotype
ENSG00000067715 (SYT1)
synaptotagmin I 		ENST00000261205 (SYT1-001) 78864669-79452006 protein_coding
ENST00000393240 (SYT1-002) 78863993-79450279 protein_coding
ENST00000446242 (SYT1-003) 79046318-79296139 protein_coding
ENST00000457153 (SYT1-004) 78864812-79452008 protein_coding
ENST00000547046 (SYT1-009) 78964035-79285794 protein_coding
ENST00000549454 (SYT1-008) 78868772-79217517 processed_transcript
ENST00000549559 (SYT1-013) 79291799-79353542 processed_transcript
ENST00000549671 (SYT1-010) 78977522-79285837 protein_coding
ENST00000551304 (SYT1-011) 78977785-79285838 protein_coding
ENST00000552074 (SYT1-007) 78868710-79285904 protein_coding
ENST00000552624 (SYT1-012) 79045705-79296124 protein_coding
ENST00000552744 (SYT1-005) 79045631-79450294 protein_coding
ENSG00000177425 (PAWR)
PRKC, apoptosis, WT1, regulator 		ENST00000328827 (PAWR-001) 79584874-79691097 protein_coding
ENST00000547016 (PAWR-003) 79688372-79690061 processed_transcript
ENST00000547571 (PAWR-005) 79667979-79690030 processed_transcript
ENST00000547699 (PAWR-007) 79592515-79597089 retained_intron
ENST00000548075 (PAWR-010) 79574979-79597982 processed_transcript
ENST00000548426 (PAWR-002) 79690018-79690814 protein_coding
ENST00000549050 (PAWR-011) 79589792-79632162 processed_transcript
ENST00000550006 (PAWR-004) 79621115-79690057 processed_transcript
ENST00000550603 (PAWR-009) 79584879-79596534 protein_coding
ENST00000551712 (PAWR-006) 79603668-79690080 protein_coding
ENST00000552637 (PAWR-008) 79690054-79690581 protein_coding
ENSG00000221788 (MIR1252)
microRNA 1252 		ENST00000408861 (MIR1252-201) 79419257-79419321 miRNA
ENSG00000238890 (AC078917.1)
 ENST00000458833 (AC078917.1-201) 79348319-79348391 miRNA
ENSG00000257474 (RP11-359M6.1)
 ENST00000548359 (RP11-359M6.1-003) 79540203-79546554 lincRNA
ENST00000551032 (RP11-359M6.1-002) 79542206-79550346 lincRNA
ENST00000552167 (RP11-359M6.1-001) 79545530-79550535 lincRNA
ENSG00000257604 (RP11-359M6.2)
 ENST00000553028 (RP11-359M6.2-001) 79500119-79500687 processed_pseudogene
ENSG00000257956 (NOP56P3)
NOP56 ribonucleoprotein pseudogene 3 		ENST00000549457 (NOP56P3-001) 79558782-79559166 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002BE_0001ENSDARG00000030614ENSDART00000041861ENSDART00000066896CIL_0002BE_0002ENSG00000067715ENST00000261205ENST00000393240ENST00000446242ENST00000457153ENST00000547046ENST00000549454ENST00000549559ENST00000549671ENST00000551304ENST00000552074ENST00000552624ENST00000552744ENSG00000177425ENST00000328827ENST00000547016ENST00000547571ENST00000547699ENST00000548075ENST00000548426ENST00000549050ENST00000550006ENST00000550603ENST00000551712ENST00000552637ENSG00000221788ENST00000408861ENSG00000238890ENST00000458833ENSG00000257474ENST00000548359ENST00000551032ENST00000552167ENSG00000257604ENST00000553028ENSG00000257956ENST00000549457
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002BE_0001ENSDARG00000030614ENSDART00000041861ENSDART00000066896CIL_0002BE_0002ENSG00000067715ENST00000261205ENST00000393240ENST00000457153ENST00000547046ENST00000549454ENST00000549559ENST00000552744ENSG00000177425ENST00000328827ENST00000547699ENST00000548075ENST00000550006ENST00000551712ENSG00000221788ENST00000408861ENSG00000238890ENST00000458833ENSG00000257474ENST00000548359ENST00000551032ENST00000552167ENSG00000257604ENST00000553028ENSG00000257956ENST00000549457
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000030614 ENSDART00000041861 N/A N/A N/A N/A N/A N/A 1.315±0.56 0.429±0.28 0.130±0.00 N/A N/A N/A N/A N/A
ENSDART00000066896 N/A N/A N/A 67.743±12.14 N/A N/A N/A N/A 0.030±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000067715 ENST00000261205 N/A 0.246±0.00 N/A 70.258±3.90 0.288±0.00 0.838±0.27 N/A N/A N/A N/A N/A 0.597±0.06 0.207±0.00 0.771±0.00
ENST00000393240 N/A N/A N/A N/A N/A N/A N/A N/A 0.725±0.00 N/A N/A N/A N/A N/A
ENST00000446242 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457153 N/A N/A N/A 21.360±0.00 0.058±0.00 N/A 0.040±0.00 0.378±0.00 0.098±0.00 N/A 0.084±0.00 0.496±0.00 N/A 0.577±0.00
ENST00000547046 N/A N/A N/A N/A N/A 1.677±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549454 N/A N/A N/A N/A 1.032±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549559 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.005±0.00 N/A
ENST00000549671 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551304 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552074 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552624 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552744 N/A N/A N/A N/A N/A N/A N/A 0.380±0.00 N/A N/A N/A 0.363±0.00 N/A N/A
ENSG00000177425 ENST00000328827 N/A 2.050±0.00 2.240±0.00 0.604±0.21 3.864±1.06 3.832±0.94 0.947±0.00 4.218±0.00 3.669±2.66 3.701±1.65 0.175±0.00 4.514±1.75 1.501±0.49 4.099±1.61
ENST00000547016 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547571 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547699 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.228±0.00 N/A 8.148±0.00
ENST00000548075 N/A N/A N/A N/A N/A N/A N/A 3.290±0.00 N/A N/A N/A 28.024±0.00 14.247±0.00 35.169±0.00
ENST00000548426 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549050 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550006 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 50.539±0.00
ENST00000550603 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551712 N/A N/A 3.364±0.00 0.476±0.00 N/A N/A 0.594±0.00 N/A N/A 2.348±0.00 0.380±0.00 5.494±0.00 N/A N/A
ENST00000552637 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000221788 ENST00000408861 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.396±0.00
ENSG00000238890 ENST00000458833 N/A N/A N/A 1.166±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000257474 ENST00000548359 0.034±0.00 0.121±0.00 N/A 0.039±0.00 0.103±0.00 0.108±0.00 0.031±0.00 0.181±0.11 0.405±0.00 N/A 0.030±0.00 0.105±0.07 0.043±0.00 0.060±0.03
ENST00000551032 N/A 0.090±0.00 N/A 0.177±0.00 N/A N/A N/A 0.334±0.00 N/A 0.192±0.03 N/A 0.057±0.03 N/A 0.026±0.00
ENST00000552167 N/A N/A N/A N/A 0.046±0.00 N/A N/A N/A N/A 0.283±0.00 N/A 0.186±0.16 N/A N/A
ENSG00000257604 ENST00000553028 N/A N/A N/A N/A 0.420±0.00 0.337±0.00 N/A 0.362±0.00 N/A 0.605±0.00 N/A 0.447±0.00 0.730±0.00 0.199±0.03
ENSG00000257956 ENST00000549457 N/A 0.130±0.00 0.297±0.00 N/A 0.149±0.00 1.039±0.00 0.230±0.00 0.686±0.00 N/A N/A 0.038±0.00 N/A N/A 0.350±0.24

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