C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002QS_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000136463-ENSG00000198909 CGP 9606 17:63600872-63696303
GeneTranscriptPositionBiotype
ENSG00000136463 (TACO1)
translational activator of mitochondrially encoded cytochrome c oxidase I 		ENST00000258975 (TACO1-001) 63600872-63608365 protein_coding
ENST00000581120 (TACO1-002) 63600882-63608364 retained_intron
ENSG00000136490 (LIMD2)
LIM domain containing 2 		ENST00000259006 (LIMD2-001) 63695902-63700140 protein_coding
ENST00000578061 (LIMD2-011) 63698289-63699861 protein_coding
ENST00000578067 (LIMD2-004) 63697816-63700108 retained_intron
ENST00000578297 (LIMD2-012) 63698498-63699344 retained_intron
ENST00000578402 (LIMD2-002) 63697816-63700685 protein_coding
ENST00000578993 (LIMD2-010) 63698335-63700102 protein_coding
ENST00000579329 (LIMD2-005) 63698256-63699362 retained_intron
ENST00000579814 (LIMD2-008) 63698467-63700132 retained_intron
ENST00000580222 (LIMD2-009) 63698189-63700113 nonsense_mediated_decay
ENST00000582055 (LIMD2-006) 63698478-63699162 protein_coding
ENST00000583211 (LIMD2-003) 63697833-63700132 protein_coding
ENST00000584645 (LIMD2-007) 63698609-63701172 protein_coding
ENSG00000198909 (MAP3K3)
mitogen-activated protein kinase kinase kinase 3 		ENST00000361357 (MAP3K3-001) 63622442-63696303 protein_coding
ENST00000361733 (MAP3K3-004) 63622440-63695105 protein_coding
ENST00000577395 (MAP3K3-005) 63622710-63693874 protein_coding
ENST00000577597 (MAP3K3-006) 63622710-63693874 nonsense_mediated_decay
ENST00000577784 (MAP3K3-011) 63688529-63689692 processed_transcript
ENST00000577839 (MAP3K3-012) 63688742-63689997 retained_intron
ENST00000578622 (MAP3K3-009) 63688199-63689614 retained_intron
ENST00000579585 (MAP3K3-007) 63622415-63695089 protein_coding
ENST00000581732 (MAP3K3-010) 63690330-63692367 nonsense_mediated_decay
ENST00000584573 (MAP3K3-002) 63622425-63693960 protein_coding
ENST00000585302 (MAP3K3-008) 63666986-63688868 nonsense_mediated_decay
ENSG00000263883 (RP11-51F16.5)
 ENST00000580496 (RP11-51F16.5-001) 63636601-63637113 transcribed_processed_pseudogene
ENSG00000270587 (RP11-51F16.9)
 ENST00000603263 (RP11-51F16.9-001) 63610772-63611184 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_0002QS_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000001983-ENSMUSG00000020700 CGP 10090 11:106066061-106155446
GeneTranscriptPositionBiotype
ENSMUSG00000001983 (Taco1)
translational activator of mitochondrially encoded cytochrome c oxidase I 		ENSMUST00000002048 (Taco1-001) 106066061-106073612 protein_coding
ENSMUSG00000020700 (Map3k3)
mitogen-activated protein kinase kinase kinase 3 		ENSMUST00000002044 (Map3k3-001) 106084613-106155446 protein_coding
ENSMUST00000124449 (Map3k3-003) 106152064-106154140 processed_transcript
ENSMUST00000129793 (Map3k3-002) 106151212-106152378 processed_transcript
ENSMUSG00000085229 (Gm11672)
predicted gene 11672 		ENSMUST00000140380 (Gm11672-001) 106126336-106127351 antisense
ENSMUSG00000085255 (Taco1os)
translational activator of mitochondrially encoded cytochrome c oxidase I, opposite strand 		ENSMUST00000140736 (Taco1os-001) 106065077-106066305 antisense

Mus musculus Ensembl (GRCm38)

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Genes
Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002QS_0001ENSG00000136463ENST00000258975ENST00000581120ENSG00000136490ENST00000259006ENST00000578061ENST00000578067ENST00000578297ENST00000578402ENST00000578993ENST00000579329ENST00000579814ENST00000580222ENST00000582055ENST00000583211ENST00000584645ENSG00000198909ENST00000361357ENST00000361733ENST00000577395ENST00000577597ENST00000577784ENST00000577839ENST00000578622ENST00000579585ENST00000581732ENST00000584573ENST00000585302ENSG00000263883ENST00000580496ENSG00000270587ENST00000603263CIL_0002QS_0002ENSMUSG00000001983ENSMUST00000002048ENSMUSG00000020700ENSMUST00000002044ENSMUST00000124449ENSMUST00000129793ENSMUSG00000085229ENSMUST00000140380ENSMUSG00000085255ENSMUST00000140736
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002QS_0001ENSG00000136463ENST00000258975ENST00000581120ENSG00000136490ENST00000259006ENST00000578402ENST00000583211ENSG00000198909ENST00000361357ENST00000361733ENST00000577395ENST00000579585ENST00000584573ENSG00000263883ENST00000580496ENSG00000270587ENST00000603263CIL_0002QS_0002ENSMUSG00000001983ENSMUST00000002048ENSMUSG00000020700ENSMUST00000002044ENSMUSG00000085229ENSMUST00000140380ENSMUSG00000085255ENSMUST00000140736
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000136463 ENST00000258975 6.689±0.00 14.374±0.00 1.937±0.00 7.833±4.30 6.888±5.03 4.740±2.40 9.493±7.44 14.783±10.79 18.783±17.52 2.728±1.19 8.739±5.49 12.170±8.26 14.440±3.90 16.096±3.66
ENST00000581120 N/A N/A N/A N/A 0.417±0.00 N/A N/A N/A N/A 0.237±0.00 N/A N/A N/A N/A
ENSG00000136490 ENST00000259006 N/A 14.229±0.00 N/A 0.892±0.00 N/A 4.046±0.00 N/A N/A 1.145±0.00 9.747±0.00 N/A 4.597±0.00 5.404±0.00 N/A
ENST00000578061 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578067 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578297 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578402 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.346±0.00 N/A
ENST00000578993 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579814 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580222 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582055 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583211 N/A 100.455±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.541±1.81 N/A
ENST00000584645 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000198909 ENST00000361357 N/A 13.529±0.00 N/A 1.413±0.00 N/A N/A 0.881±0.00 N/A N/A 1.979±0.00 N/A 2.898±1.06 N/A 7.443±0.00
ENST00000361733 N/A N/A 0.752±0.00 2.028±0.00 4.636±0.00 0.831±0.00 1.256±0.00 N/A 1.620±0.21 2.485±0.00 2.730±1.02 7.083±0.00 N/A N/A
ENST00000577395 9.625±0.00 N/A 3.168±0.00 1.975±0.70 N/A 4.399±1.68 1.781±0.00 1.551±0.00 1.231±0.00 7.075±0.00 N/A 4.044±0.05 5.227±0.00 11.269±0.00
ENST00000577597 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577784 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577839 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578622 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579585 N/A N/A 0.777±0.00 N/A 1.547±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584573 N/A N/A N/A N/A N/A 1.008±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585302 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000263883 ENST00000580496 0.078±0.00 0.128±0.00 0.611±0.00 0.194±0.00 N/A 0.060±0.02 0.327±0.00 0.136±0.00 0.305±0.00 0.929±0.70 N/A 0.531±0.48 0.048±0.00 0.700±0.00
ENSG00000270587 ENST00000603263 0.229±0.00 0.760±0.00 N/A N/A 0.817±0.00 0.049±0.00 0.686±0.00 1.050±0.00 N/A N/A 0.747±0.00 0.758±0.00 0.453±0.47 0.138±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001983 ENSMUST00000002048 2.121±0.96 12.523±1.19 N/A 6.631±0.00 5.826±3.22 5.984±1.70 8.301±0.42 6.933±3.39 4.581±1.59 3.600±2.05 N/A 9.269±1.32 11.158±12.37 2.219±1.88
ENSMUSG00000020700 ENSMUST00000002044 20.486±5.50 4.974±1.79 14.961±0.40 8.535±4.42 21.613±1.87 6.133±0.00 2.694±0.00 13.619±0.93 4.947±1.72 29.676±0.66 2.009±0.00 13.137±6.84 14.652±9.35 2.292±0.56
ENSMUST00000124449 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129793 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085229 ENSMUST00000140380 0.075±0.00 N/A 0.101±0.04 0.100±0.01 0.142±0.04 N/A N/A 0.121±0.03 0.062±0.06 0.230±0.07 0.080±0.00 0.186±0.05 0.118±0.02 0.030±0.00
ENSMUSG00000085255 ENSMUST00000140736 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.514±0.21

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