C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002XQ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000060683-ENSDARG00000006691 CGP 7955 5:34483262-34504918
GeneTranscriptPositionBiotype
ENSDARG00000006691 (rpl12)
ribosomal protein L12 		ENSDART00000008807 (rpl12-001) 34500586-34504918 protein_coding
ENSDART00000135459 (rpl12-003) 34500598-34503969 retained_intron
ENSDART00000141676 (rpl12-002) 34500605-34504807 processed_transcript
ENSDART00000144695 (rpl12-004) 34501491-34504306 retained_intron
ENSDARG00000060683 (lrsam1)
leucine rich repeat and sterile alpha motif containing 1 		ENSDART00000085769 (lrsam1-001) 34483262-34500060 protein_coding
ENSDARG00000083894 (SNORA65)
Small nucleolar RNA SNORA65 		ENSDART00000119294 (SNORA65.1-201) 34503103-34503229 snoRNA
ENSDARG00000083937 (SNORA65)
Small nucleolar RNA SNORA65 		ENSDART00000119337 (SNORA65.2-201) 34504370-34504496 snoRNA

Danio rerio Ensembl (Zv9)

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CIL_0002XQ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026792-ENSMUSG00000038900 CGP 10090 2:32925216-32964496
GeneTranscriptPositionBiotype
ENSMUSG00000026792 (Lrsam1)
leucine rich repeat and sterile alpha motif containing 1 		ENSMUST00000028132 (Lrsam1-201) 32925216-32961255 protein_coding
ENSMUST00000113200 (Lrsam1-001) 32925220-32961614 protein_coding
ENSMUST00000124492 (Lrsam1-002) 32957249-32961593 protein_coding
ENSMUST00000127321 (Lrsam1-006) 32954221-32961599 protein_coding
ENSMUST00000133832 (Lrsam1-004) 32954223-32961592 protein_coding
ENSMUST00000138015 (Lrsam1-005) 32961074-32961606 processed_transcript
ENSMUST00000145578 (Lrsam1-003) 32957256-32961593 protein_coding
ENSMUST00000145699 (Lrsam1-007) 32960247-32961600 processed_transcript
ENSMUST00000147528 (Lrsam1-008) 32954236-32959906 protein_coding
ENSMUSG00000026796 (Fam129b)
family with sequence similarity 129, member B 		ENSMUST00000028135 (Fam129b-001) 32876114-32925254 protein_coding
ENSMUST00000125347 (Fam129b-003) 32910908-32912587 retained_intron
ENSMUST00000138781 (Fam129b-002) 32895632-32909958 protein_coding
ENSMUST00000150875 (Fam129b-005) 32918641-32922107 processed_transcript
ENSMUST00000151607 (Fam129b-006) 32921642-32923639 processed_transcript
ENSMUST00000154514 (Fam129b-004) 32914711-32921024 processed_transcript
ENSMUSG00000038900 (Rpl12)
ribosomal protein L12 		ENSMUST00000102811 (Rpl12-002) 32961740-32964043 processed_transcript
ENSMUST00000125415 (Rpl12-004) 32961740-32963311 processed_transcript
ENSMUST00000126610 (Rpl12-001) 32961559-32964496 protein_coding
ENSMUST00000133842 (Rpl12-005) 32961732-32962938 processed_transcript
ENSMUST00000134912 (Rpl12-007) 32963389-32964035 processed_transcript
ENSMUST00000144644 (Rpl12-006) 32962266-32963066 processed_transcript
ENSMUST00000154340 (Rpl12-003) 32961729-32963633 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002XQ_0001ENSDARG00000006691ENSDART00000008807ENSDART00000135459ENSDART00000141676ENSDART00000144695ENSDARG00000060683ENSDART00000085769ENSDARG00000083894ENSDART00000119294ENSDARG00000083937ENSDART00000119337CIL_0002XQ_0002ENSMUSG00000026792ENSMUST00000028132ENSMUST00000113200ENSMUST00000124492ENSMUST00000127321ENSMUST00000133832ENSMUST00000138015ENSMUST00000145578ENSMUST00000145699ENSMUST00000147528ENSMUSG00000026796ENSMUST00000028135ENSMUST00000125347ENSMUST00000138781ENSMUST00000150875ENSMUST00000151607ENSMUST00000154514ENSMUSG00000038900ENSMUST00000102811ENSMUST00000125415ENSMUST00000126610ENSMUST00000133842ENSMUST00000134912ENSMUST00000144644ENSMUST00000154340
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002XQ_0001ENSDARG00000006691ENSDART00000008807ENSDART00000141676ENSDART00000144695ENSDARG00000060683ENSDART00000085769ENSDARG00000083894ENSDART00000119294ENSDARG00000083937ENSDART00000119337CIL_0002XQ_0002ENSMUSG00000026792ENSMUST00000028132ENSMUST00000113200ENSMUSG00000026796ENSMUST00000028135ENSMUSG00000038900ENSMUST00000102811ENSMUST00000125415ENSMUST00000126610
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000006691 ENSDART00000008807 N/A N/A N/A 232.860±176.00 N/A N/A 1121.678±810.22 2118.790±0.00 703.766±0.00 N/A 604.517±0.00 N/A N/A N/A
ENSDART00000135459 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000141676 N/A N/A N/A 0.370±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000144695 N/A N/A N/A 0.326±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000060683 ENSDART00000085769 N/A N/A N/A N/A N/A N/A 5.032±0.00 0.740±0.55 0.783±0.00 N/A N/A N/A N/A N/A
ENSDARG00000083894 ENSDART00000119294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.698±0.00 N/A N/A N/A
ENSDARG00000083937 ENSDART00000119337 N/A N/A N/A 25.392±0.00 N/A N/A 0.804±0.00 N/A 1.768±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026792 ENSMUST00000028132 N/A 11.350±1.19 N/A 5.487±0.00 N/A N/A N/A N/A 5.115±0.99 N/A N/A 10.435±1.15 N/A N/A
ENSMUST00000113200 8.135±0.29 N/A N/A 6.561±2.34 N/A N/A 4.381±0.35 6.066±0.78 4.800±0.02 N/A N/A N/A N/A 3.382±0.00
ENSMUST00000124492 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127321 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133832 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138015 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145578 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145699 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147528 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000026796 ENSMUST00000028135 20.448±5.55 14.100±2.27 43.049±10.86 12.503±5.67 26.664±5.89 37.699±5.68 8.632±2.36 12.671±2.84 4.524±0.64 118.530±11.11 N/A 24.584±3.07 60.046±49.23 N/A
ENSMUST00000125347 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138781 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150875 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151607 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154514 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000038900 ENSMUST00000102811 200.649±48.03 N/A 429.249±77.78 87.636±29.95 178.953±120.22 73.037±0.00 78.266±19.06 88.651±19.54 179.696±137.68 N/A 156.645±25.07 282.280±303.11 453.604±285.03 67.040±15.86
ENSMUST00000125415 147.525±0.00 N/A N/A N/A 201.011±9.32 166.416±23.10 N/A N/A 230.512±0.00 N/A 84.565±11.31 129.463±34.21 N/A N/A
ENSMUST00000126610 63.327±0.00 169.951±14.60 N/A N/A 156.608±11.99 162.351±57.52 28.341±11.48 65.708±8.63 126.108±99.16 113.426±0.00 31.760±10.83 123.451±47.42 N/A 42.016±7.60
ENSMUST00000133842 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134912 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144644 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154340 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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