C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000008807 rpl12-001 ENSDARG00000006691 7955 + 5:34500586-34504918 protein_coding

Danio rerio EnsemblZv9

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000008807
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000008807 232.860±176.00 1121.678±810.22 2118.790±0.00 703.766±0.00 604.517±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002XQ CIL_0002XQ_0001 CGP 5:34483262-34504918

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0030529 IEA ribonucleoprotein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000076703 Gm9396-001 protein_coding Mus_musculus 0.0000000004 69
ENSMUST00000092620 Gm10275-002 processed_transcript Mus_musculus 0.0000000004 69
ENSMUST00000102811 Rpl12-002 processed_transcript Mus_musculus 0.0000000005 69
ENSMUST00000125415 Rpl12-004 processed_transcript Mus_musculus 0.0000000004 69
ENSMUST00000126610 Rpl12-001 protein_coding Mus_musculus 0.0000000008 69
ENSMUST00000133842 Rpl12-005 processed_transcript Mus_musculus 0.0000000005 69
ENSMUST00000134912 Rpl12-007 processed_transcript Mus_musculus 0.000000002 69
ENSMUST00000154340 Rpl12-003 processed_transcript Mus_musculus 0.0000000009 69
ENST00000361436 RPL12-001 protein_coding Homo_sapiens 0.000000001 68
ENST00000460355 NBEAL1-003 retained_intron Homo_sapiens 0.000000008 68
ENST00000497322 RPL12-002 processed_transcript Homo_sapiens 0.000000005 68
ENST00000497825 RPL12-003 processed_transcript Homo_sapiens 0.000000002 68
ENST00000536368 RPL12-201 protein_coding Homo_sapiens 0.00000001 64

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