C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: Hmgb3 retrotransposed pseudogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162465 Hmgb3-ps-001 ENSMUSG00000089795 10090 + 14:9863102-9863702 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaENSMUST00000162465
Transcript ID Placenta
ENSMUST00000162465 0.016±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00034H CIL_00034H_0002 CGP 14:8431192-11162035

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000325307 HMGB3-001 protein_coding Homo_sapiens 0 577
ENST00000393368 HMGB3P1-001 processed_pseudogene Homo_sapiens 0 412
ENST00000414981 HMGB3P23-001 processed_pseudogene Homo_sapiens 0 248
ENST00000419110 HMGB3-002 protein_coding Homo_sapiens 0 577
ENST00000430118 HMGB3-004 protein_coding Homo_sapiens 0 464
ENST00000444896 HMGB3P6-001 processed_pseudogene Homo_sapiens 0 555
ENST00000448905 HMGB3-201 protein_coding Homo_sapiens 0 577
ENST00000449709 HMGB3P8-001 processed_pseudogene Homo_sapiens 0 508
ENST00000455596 HMGB3-003 protein_coding Homo_sapiens 0 577
ENST00000457863 HMGB3P30-001 processed_pseudogene Homo_sapiens 0 490
ENST00000507326 HMGB3P15-001 processed_pseudogene Homo_sapiens 0 492
ENST00000510526 HMGB3P3-001 processed_pseudogene Homo_sapiens 0 233
ENST00000560051 HMGB3P26-001 processed_pseudogene Homo_sapiens 0 451

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