C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000398_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000178562-ENSG00000163599 CGP 9606 2:203706475-203873960
GeneTranscriptPositionBiotype
ENSG00000163599 (CTLA4)
cytotoxic T-lymphocyte-associated protein 4 		ENST00000295854 (CTLA4-005) 203867943-203872775 protein_coding
ENST00000302823 (CTLA4-001) 203867786-203873960 protein_coding
ENST00000427473 (CTLA4-002) 203870232-203873185 protein_coding
ENST00000472206 (CTLA4-004) 203867943-203872812 protein_coding
ENST00000487393 (CTLA4-003) 203867943-203872812 processed_transcript
ENSG00000178562 (CD28)
CD28 molecule 		ENST00000324106 (CD28-001) 203706548-203738912 protein_coding
ENST00000374481 (CD28-201) 203706475-203738910 protein_coding
ENST00000458610 (CD28-002) 203706524-203734912 protein_coding
ENSG00000213925 (NPM1P33)
nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 33 		ENST00000438918 (NPM1P33-001) 203772631-203773502 processed_pseudogene
ENSG00000224791 (KRT18P39)
keratin 18 pseudogene 39 		ENST00000415349 (KRT18P39-001) 203764295-203765593 processed_pseudogene
CIL_000398_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026012-ENSMUSG00000026011 CGP 10090 1:60716800-60915832
GeneTranscriptPositionBiotype
ENSMUSG00000026011 (Ctla4)
cytotoxic T-lymphocyte-associated protein 4 		ENSMUST00000027164 (Ctla4-001) 60909025-60915832 protein_coding
ENSMUST00000097720 (Ctla4-002) 60909171-60914769 protein_coding
ENSMUST00000124816 (Ctla4-004) 60887000-60912716 processed_transcript
ENSMUSG00000026012 (Cd28)
CD28 antigen 		ENSMUST00000027165 (Cd28-001) 60746358-60773359 protein_coding
ENSMUST00000132833 (Cd28-003) 60716800-60763163 processed_transcript
ENSMUST00000153207 (Cd28-002) 60746402-60764626 retained_intron
ENSMUSG00000081382 (Rpl18-ps1)
ribosomal protein L18, pseudogene 1 		ENSMUST00000121555 (Rpl18-ps1-001) 60900898-60901422 processed_pseudogene
ENSMUSG00000083118 (Gm11609)
predicted gene 11609 		ENSMUST00000121926 (Gm11609-001) 60792490-60793832 processed_pseudogene
ENSMUSG00000083355 (Gm11581)
predicted gene 11581 		ENSMUST00000122024 (Gm11581-001) 60809116-60809942 processed_pseudogene
ENSMUSG00000085965 (2310016D23Rik)
RIKEN cDNA 2310016D23 gene 		ENSMUST00000130082 (2310016D23Rik-001) 60778843-60803790 lincRNA
ENSMUSG00000086795 (Gm11579)
predicted gene 11579 		ENSMUST00000145502 (Gm11579-001) 60776665-60781834 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000398_0001ENSG00000163599ENST00000295854ENST00000302823ENST00000427473ENST00000472206ENST00000487393ENSG00000178562ENST00000324106ENST00000374481ENST00000458610ENSG00000213925ENST00000438918ENSG00000224791ENST00000415349CIL_000398_0002ENSMUSG00000026011ENSMUST00000027164ENSMUST00000097720ENSMUST00000124816ENSMUSG00000026012ENSMUST00000027165ENSMUST00000132833ENSMUST00000153207ENSMUSG00000081382ENSMUST00000121555ENSMUSG00000083118ENSMUST00000121926ENSMUSG00000083355ENSMUST00000122024ENSMUSG00000085965ENSMUST00000130082ENSMUSG00000086795ENSMUST00000145502
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000398_0001ENSG00000163599ENST00000295854ENST00000302823ENST00000427473ENSG00000178562ENST00000324106ENST00000374481ENST00000458610ENSG00000213925ENST00000438918ENSG00000224791ENST00000415349CIL_000398_0002ENSMUSG00000026011ENSMUST00000027164ENSMUST00000097720ENSMUST00000124816ENSMUSG00000026012ENSMUST00000027165ENSMUST00000132833ENSMUST00000153207ENSMUSG00000081382ENSMUST00000121555ENSMUSG00000083118ENSMUST00000121926ENSMUSG00000083355ENSMUST00000122024ENSMUSG00000085965ENSMUST00000130082ENSMUSG00000086795ENSMUST00000145502
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000163599 ENST00000295854 N/A N/A N/A N/A N/A N/A 0.136±0.00 N/A N/A 1.625±0.00 N/A 0.189±0.00 N/A N/A
ENST00000302823 0.046±0.00 0.499±0.00 N/A 0.122±0.00 0.488±0.00 N/A 0.040±0.00 N/A 0.010±0.00 N/A N/A 0.276±0.20 0.084±0.03 0.290±0.12
ENST00000427473 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.364±0.09 0.043±0.00 0.397±0.00
ENST00000472206 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487393 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000178562 ENST00000324106 0.266±0.00 1.732±0.00 N/A 0.043±0.00 N/A N/A 0.010±0.00 N/A N/A 1.405±0.00 N/A 0.210±0.10 2.452±0.47 N/A
ENST00000374481 N/A N/A N/A N/A N/A 0.094±0.00 N/A 0.176±0.00 N/A 0.389±0.00 0.024±0.00 0.280±0.00 0.703±0.00 0.247±0.13
ENST00000458610 N/A N/A N/A N/A N/A N/A N/A 0.683±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000213925 ENST00000438918 0.037±0.00 0.079±0.00 N/A 0.063±0.00 0.101±0.00 0.129±0.00 0.012±0.00 0.013±0.00 0.023±0.00 0.049±0.00 N/A 0.060±0.00 N/A 0.137±0.00
ENSG00000224791 ENST00000415349 N/A 0.097±0.00 N/A N/A 0.018±0.00 0.026±0.00 N/A 0.017±0.00 0.015±0.00 N/A N/A 0.043±0.02 0.019±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026011 ENSMUST00000027164 0.043±0.03 0.109±0.04 0.065±0.01 0.023±0.00 1.526±0.71 0.118±0.07 0.118±0.03 0.058±0.03 0.004±0.00 0.175±0.07 0.091±0.03 0.036±0.00 0.046±0.03 0.031±0.00
ENSMUST00000097720 N/A N/A N/A 0.015±0.00 1.399±0.00 N/A N/A 0.076±0.04 0.100±0.00 N/A 0.088±0.00 0.220±0.10 0.076±0.05 0.161±0.00
ENSMUST00000124816 N/A N/A N/A 0.208±0.00 N/A 0.075±0.00 0.185±0.01 N/A N/A N/A 0.103±0.00 N/A N/A 0.036±0.00
ENSMUSG00000026012 ENSMUST00000027165 0.222±0.03 0.161±0.12 0.283±0.07 0.026±0.01 3.012±1.06 0.441±0.09 0.644±0.10 0.171±0.13 0.059±0.02 0.534±0.11 0.764±0.23 0.190±0.09 0.077±0.04 0.041±0.04
ENSMUST00000132833 N/A N/A N/A N/A N/A N/A N/A 0.044±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000153207 N/A N/A N/A N/A N/A 0.284±0.00 N/A N/A 0.107±0.03 N/A N/A 0.137±0.04 N/A N/A
ENSMUSG00000081382 ENSMUST00000121555 0.278±0.16 5.171±3.20 4.420±0.34 0.630±0.37 0.680±0.57 0.399±0.20 0.303±0.08 0.474±0.16 0.950±1.12 0.385±0.15 0.148±0.02 0.718±0.48 0.259±0.23 0.201±0.08
ENSMUSG00000083118 ENSMUST00000121926 N/A 0.258±0.00 0.012±0.00 N/A N/A N/A 0.050±0.00 N/A N/A N/A 0.096±0.06 N/A 0.062±0.00 0.144±0.11
ENSMUSG00000083355 ENSMUST00000122024 0.179±0.07 N/A 0.666±0.20 0.049±0.00 0.200±0.04 0.139±0.00 0.063±0.00 N/A 0.130±0.04 0.199±0.08 0.288±0.12 0.348±0.23 0.075±0.01 0.067±0.00
ENSMUSG00000085965 ENSMUST00000130082 N/A N/A 0.176±0.00 N/A 0.562±0.14 N/A 0.327±0.28 N/A N/A 0.299±0.15 N/A N/A N/A N/A
ENSMUSG00000086795 ENSMUST00000145502 N/A N/A N/A N/A 0.141±0.08 N/A 0.086±0.04 0.149±0.00 0.059±0.02 0.273±0.00 N/A N/A 0.014±0.00 N/A

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