C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 33
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000438918 NPM1P33-001 ENSG00000213925 9606 - 2:203772631-203773502 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryTestisENST00000438918
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Testis
ENST00000438918 0.037±0.00 0.079±0.00 0.063±0.00 0.101±0.00 0.129±0.00 0.012±0.00 0.013±0.00 0.023±0.00 0.049±0.00 0.060±0.00 0.137±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000398 CIL_000398_0001 CGP 2:203706475-203873960

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 968
ENSMUST00000109354 Npm1-002 protein_coding Mus_musculus 0 815
ENSMUST00000101375 Npm1-003 protein_coding Mus_musculus 0 813
ENSMUST00000164523 Gm5611-201 protein_coding Mus_musculus 0 763
ENSMUST00000118871 Gm15484-001 processed_pseudogene Mus_musculus 0 717
ENSMUST00000172394 Gm17060-001 processed_pseudogene Mus_musculus 0 712
ENSMUST00000120677 Gm12583-001 processed_pseudogene Mus_musculus 0 710
ENSMUST00000168993 Gm7289-001 processed_pseudogene Mus_musculus 0 630
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 0 617
ENSMUST00000118047 Gm14681-001 processed_pseudogene Mus_musculus 0 453
ENSMUST00000141881 Npm1-004 processed_transcript Mus_musculus 4e-36 156
ENSMUST00000146759 Npm1-005 processed_transcript Mus_musculus 0 213

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