C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003FM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000059798-ENSDARG00000010878 CGP 7955 7:50012614-50124044
GeneTranscriptPositionBiotype
ENSDARG00000010878 (cdkn1c)
cyclin-dependent kinase inhibitor 1C 		ENSDART00000006378 (cdkn1c-001) 50120652-50124044 protein_coding
ENSDARG00000059798 (kcnq1)
potassium voltage-gated channel, KQT-like subfamily, member 1 		ENSDART00000083514 (kcnq1-001) 50012830-50114217 protein_coding
ENSDART00000083516 (kcnq1-201) 50012830-50113710 protein_coding
ENSDART00000125483 (kcnq1-002) 50012614-50059028 protein_coding
CIL_0003FM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000053918-ENSG00000129757 CGP 9606 11:2444684-2885881
GeneTranscriptPositionBiotype
ENSG00000053918 (KCNQ1)
potassium voltage-gated channel, KQT-like subfamily, member 1 		ENST00000155840 (KCNQ1-001) 2444991-2849109 protein_coding
ENST00000335475 (KCNQ1-002) 2461436-2848238 protein_coding
ENST00000345015 (KCNQ1-004) 2445322-2527976 processed_transcript
ENST00000380776 (KCNQ1-006) 2461887-2527973 protein_coding
ENST00000496887 (KCNQ1-005) 2444684-2572906 protein_coding
ENST00000526095 (KCNQ1-007) 2777575-2848511 processed_transcript
ENSG00000129757 (CDKN1C)
cyclin-dependent kinase inhibitor 1C (p57, Kip2) 		ENST00000380725 (CDKN1C-002) 2883213-2885749 protein_coding
ENST00000414822 (CDKN1C-001) 2883213-2885881 protein_coding
ENST00000430149 (CDKN1C-006) 2883579-2885771 protein_coding
ENST00000440480 (CDKN1C-003) 2883218-2885813 protein_coding
ENST00000471157 (CDKN1C-004) 2883675-2884701 retained_intron
ENSG00000229414 (KCNQ1-AS1)
KCNQ1 antisense RNA 1 		ENST00000440887 (KCNQ1-AS1-002) 2840135-2861568 antisense
ENSG00000236041 (COX6CP18)
cytochrome c oxidase subunit VIc pseudogene 18 		ENST00000448769 (COX6CP18-001) 2771356-2771577 processed_pseudogene
ENSG00000237941 (KCNQ1DN)
KCNQ1 downstream neighbor (non-protein coding) 		ENST00000441418 (KCNQ1DN-001) 2870033-2872105 antisense
ENSG00000269821 (KCNQ1OT1)
KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) 		ENST00000597346 (KCNQ1OT1-001) 2608328-2699994 antisense
CIL_0003FM_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000009545-ENSMUSG00000037664 CGP 10090 7:143106362-143461050
GeneTranscriptPositionBiotype
ENSMUSG00000009545 (Kcnq1)
potassium voltage-gated channel, subfamily Q, member 1 		ENSMUST00000009689 (Kcnq1-001) 143107254-143427042 protein_coding
ENSMUST00000185383 (Kcnq1-007) 143107551-143426125 protein_coding
ENSMUST00000186284 (Kcnq1-004) 143108351-143149537 protein_coding
ENSMUST00000186288 (Kcnq1-002) 143106515-143149537 protein_coding
ENSMUST00000186488 (Kcnq1-006) 143106362-143149537 protein_coding
ENSMUST00000186798 (Kcnq1-003) 143106745-143149537 protein_coding
ENSMUST00000187213 (Kcnq1-005) 143109194-143149537 protein_coding
ENSMUSG00000037664 (Cdkn1c)
cyclin-dependent kinase inhibitor 1C (P57) 		ENSMUST00000037287 (Cdkn1c-201) 143458350-143461050 protein_coding
ENSMUST00000167912 (Cdkn1c-202) 143458350-143461050 protein_coding
ENSMUSG00000101062 (RP23-101N20.10)
predicted gene 28821 		ENSMUST00000185637 (RP23-101N20.10-001) 143135031-143140608 antisense
ENSMUSG00000101360 (RP23-124B2.2)
RIKEN cDNA 4933417O13 gene 		ENSMUST00000188294 (RP23-124B2.2-001) 143322775-143330650 antisense
ENSMUSG00000101609 (Kcnq1ot1)
KCNQ1 overlapping transcript 1 		ENSMUST00000185789 (Kcnq1ot1-001) 143212155-143296549 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003FM_0001ENSDARG00000010878ENSDART00000006378ENSDARG00000059798ENSDART00000083514ENSDART00000083516ENSDART00000125483CIL_0003FM_0002ENSG00000053918ENST00000155840ENST00000335475ENST00000345015ENST00000380776ENST00000496887ENST00000526095ENSG00000129757ENST00000380725ENST00000414822ENST00000430149ENST00000440480ENST00000471157ENSG00000229414ENST00000440887ENSG00000236041ENST00000448769ENSG00000237941ENST00000441418ENSG00000269821ENST00000597346CIL_0003FM_0003ENSMUSG00000009545ENSMUST00000009689ENSMUST00000185383ENSMUST00000186284ENSMUST00000186288ENSMUST00000186488ENSMUST00000186798ENSMUST00000187213ENSMUSG00000037664ENSMUST00000037287ENSMUST00000167912ENSMUSG00000101062ENSMUST00000185637ENSMUSG00000101360ENSMUST00000188294ENSMUSG00000101609ENSMUST00000185789
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003FM_0001ENSDARG00000010878ENSDART00000006378ENSDARG00000059798ENSDART00000083514ENSDART00000083516ENSDART00000125483CIL_0003FM_0002ENSG00000053918ENST00000155840ENST00000335475ENSG00000129757ENST00000380725ENST00000414822ENST00000430149ENST00000440480ENST00000471157ENSG00000229414ENST00000440887ENSG00000236041ENST00000448769ENSG00000237941ENST00000441418ENSG00000269821ENST00000597346CIL_0003FM_0003ENSMUSG00000009545ENSMUST00000009689ENSMUSG00000037664ENSMUST00000037287ENSMUST00000167912ENSMUSG00000101062ENSMUST00000185637ENSMUSG00000101360ENSMUST00000188294ENSMUSG00000101609ENSMUST00000185789
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000010878 ENSDART00000006378 N/A N/A N/A 1.692±0.37 N/A N/A 3.390±1.76 0.711±0.21 N/A N/A 1.631±0.00 N/A N/A N/A
ENSDARG00000059798 ENSDART00000083514 N/A N/A N/A 0.069±0.00 N/A N/A 10.700±1.65 0.255±0.00 0.053±0.00 N/A 0.372±0.00 N/A N/A N/A
ENSDART00000083516 N/A N/A N/A 0.048±0.00 N/A N/A N/A N/A N/A N/A 0.480±0.00 N/A N/A N/A
ENSDART00000125483 N/A N/A N/A 0.064±0.01 N/A N/A N/A 0.240±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000053918 ENST00000155840 1.961±0.00 3.863±0.00 N/A N/A 2.244±0.00 N/A 8.261±0.00 20.970±0.00 0.706±0.00 6.756±0.00 N/A N/A 3.097±1.61 3.221±0.00
ENST00000335475 N/A N/A N/A N/A N/A N/A 4.639±0.00 N/A N/A N/A N/A 9.453±0.00 N/A N/A
ENST00000345015 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000380776 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496887 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526095 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000129757 ENST00000380725 N/A 1.712±0.00 N/A 6.526±0.00 N/A 13.174±0.00 N/A N/A 0.930±0.00 N/A 4.166±3.60 21.907±6.76 343.272±8.53 3.266±2.82
ENST00000414822 16.551±0.00 1.227±0.00 1.228±0.00 16.756±0.00 11.688±0.00 1.525±0.00 5.123±0.00 N/A N/A 0.759±0.00 3.370±0.00 11.797±0.00 N/A 4.576±0.00
ENST00000430149 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.375±0.00 326.755±0.00 N/A
ENST00000440480 51.502±0.00 3.334±0.00 1.474±0.00 11.454±6.42 13.734±11.44 7.980±7.06 11.161±9.22 52.020±51.45 3.938±1.39 12.040±7.90 9.337±6.91 21.510±9.55 398.176±93.69 4.128±2.93
ENST00000471157 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.037±0.00
ENSG00000229414 ENST00000440887 N/A 0.051±0.00 N/A 0.272±0.00 N/A N/A 0.016±0.00 N/A N/A N/A N/A 0.114±0.09 0.081±0.02 0.185±0.09
ENSG00000236041 ENST00000448769 N/A N/A 4.847±0.00 N/A N/A N/A N/A 2.698±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000237941 ENST00000441418 N/A N/A N/A 0.976±0.00 0.144±0.00 N/A N/A N/A N/A N/A N/A 0.112±0.00 0.068±0.01 0.905±0.23
ENSG00000269821 ENST00000597346 0.125±0.00 0.254±0.00 1.374±0.00 0.207±0.12 0.729±0.58 0.428±0.32 0.220±0.08 0.307±0.01 0.409±0.37 0.549±0.46 0.088±0.06 0.496±0.39 0.162±0.17 0.407±0.22
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000009545 ENSMUST00000009689 2.662±1.52 6.533±0.37 N/A N/A 1.325±0.11 28.350±0.90 16.310±1.73 9.070±3.60 0.437±0.05 10.331±3.25 0.198±0.01 7.208±1.14 N/A 1.156±0.00
ENSMUST00000185383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186284 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186288 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186488 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186798 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187213 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000037664 ENSMUST00000037287 5.894±1.47 180.012±30.48 3.973±0.87 33.206±16.64 7.514±2.23 3.471±0.71 2.503±0.51 6.021±2.64 24.390±24.63 5.864±0.57 4.704±0.75 5.561±2.11 415.908±208.45 2.107±0.33
ENSMUST00000167912 4.365±1.22 50.719±7.54 1.254±0.31 12.834±3.76 6.491±1.84 2.306±1.06 1.579±0.60 5.388±1.06 4.690±4.64 3.811±1.05 1.426±0.32 4.243±1.17 153.407±87.76 3.036±1.59
ENSMUSG00000101062 ENSMUST00000185637 0.116±0.03 N/A N/A N/A N/A 0.430±0.00 0.063±0.00 0.090±0.03 N/A 0.127±0.03 N/A N/A N/A 1.113±0.19
ENSMUSG00000101360 ENSMUST00000188294 0.073±0.05 0.157±0.09 0.041±0.01 0.048±0.02 0.044±0.02 0.120±0.06 0.069±0.04 0.051±0.03 0.061±0.04 0.146±0.06 0.066±0.04 0.098±0.08 0.204±0.16 4.336±2.95
ENSMUSG00000101609 ENSMUST00000185789 0.391±0.21 0.451±0.09 0.224±0.02 0.385±0.00 0.453±0.03 0.446±0.04 0.205±0.02 0.354±0.10 0.162±0.06 0.549±0.03 0.025±0.00 0.693±0.24 0.299±0.18 0.491±0.09

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