C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000521088 NPM1P6-001 ENSG00000213881 9606 + 8:61202350-61203220 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000521088
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000521088 0.139±0.00 0.175±0.00 0.051±0.00 0.182±0.00 0.242±0.00 0.130±0.00 0.105±0.00 0.082±0.00 0.189±0.01 0.095±0.00 0.074±0.00 0.069±0.00 0.125±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003FX CIL_0003FX_0001 CGP 8:60678778-61501645
CIL_0003GG CIL_0003GG_0001 CGP 8:61057158-61714640

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 1077
ENSMUST00000109354 Npm1-002 protein_coding Mus_musculus 0 915
ENSMUST00000101375 Npm1-003 protein_coding Mus_musculus 0 913
ENSMUST00000164523 Gm5611-201 protein_coding Mus_musculus 0 872
ENSMUST00000118871 Gm15484-001 processed_pseudogene Mus_musculus 0 830
ENSMUST00000120677 Gm12583-001 processed_pseudogene Mus_musculus 0 776
ENSMUST00000172394 Gm17060-001 processed_pseudogene Mus_musculus 0 754
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 0 656
ENSMUST00000118047 Gm14681-001 processed_pseudogene Mus_musculus 0 510
ENSMUST00000117205 Gm13423-001 processed_pseudogene Mus_musculus 0 281
ENSMUST00000141881 Npm1-004 processed_transcript Mus_musculus 7e-39 165
ENSMUST00000146759 Npm1-005 processed_transcript Mus_musculus 0 272
ENSMUST00000168993 Gm7289-001 processed_pseudogene Mus_musculus 0 676

Loading